Calcium in PDB 3soq: The Structure of the First Ywtd Beta Propeller Domain of LRP6 in Complex with A DKK1 Peptide

The structure of The Structure of the First Ywtd Beta Propeller Domain of LRP6 in Complex with A DKK1 Peptide, PDB code: 3soq was solved by W.Wang, E.Bourhis, Y.Zhang, L.Rouge, Y.Wu, Y.Franke, A.G.Cochran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.04 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	103.320, 46.976, 68.722, 90.00, 97.27, 90.00
R / Rfree (%)	17.7 / 22.1

The binding sites of Calcium atom in the The Structure of the First Ywtd Beta Propeller Domain of LRP6 in Complex with A DKK1 Peptide (pdb code 3soq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Structure of the First Ywtd Beta Propeller Domain of LRP6 in Complex with A DKK1 Peptide, PDB code: 3soq:

Calcium binding site 1 out of 1 in the The Structure of the First Ywtd Beta Propeller Domain of LRP6 in Complex with A DKK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of the First Ywtd Beta Propeller Domain of LRP6 in Complex with A DKK1 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca336 b:67.2 occ:1.00 O A:HOH397 2.7 51.5 1.0 O A:SER114 2.8 21.2 1.0 OD1 A:ASN117 2.9 31.4 1.0 O A:ASP138 2.9 24.6 1.0 O A:HOH433 3.0 42.1 1.0 CG A:ASN117 3.7 27.5 1.0 ND2 A:ASN117 3.8 30.4 1.0 NE2 A:GLN139 3.8 23.9 1.0 OD1 A:ASP138 3.9 33.9 1.0 C A:SER114 4.0 20.3 1.0 C A:ASP138 4.1 23.9 1.0 CD A:GLN139 4.3 31.7 1.0 CA A:GLU115 4.5 21.0 1.0 O A:GLU115 4.6 29.3 1.0 CA A:ASP138 4.7 22.8 1.0 N A:GLU115 4.7 20.6 1.0 OE1 A:GLN139 4.8 41.3 1.0 C A:GLU115 4.8 25.3 1.0 O A:HOH407 4.9 27.0 1.0 CG A:ASP138 5.0 29.8 1.0 CA A:SER114 5.0 16.3 1.0

E.Bourhis, W.Wang, C.Tam, J.Hwang, Y.Zhang, D.Spittler, O.W.Huang, Y.Gong, A.Estevez, I.Zilberleyb, L.Rouge, C.Chiu, Y.Wu, M.Costa, R.N.Hannoush, Y.Franke, A.G.Cochran. Wnt Antagonists Bind Through A Short Peptide to the First Beta-Propeller Domain of LRP5/6. Structure V. 19 1433 2011.
ISSN: ISSN 0969-2126
PubMed: 21944579
DOI: 10.1016/J.STR.2011.07.005