Atomistry » Calcium » PDB 3tz1-3uiq » 3u39
Atomistry »
  Calcium »
    PDB 3tz1-3uiq »
      3u39 »

Calcium in PDB 3u39: Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase

Enzymatic activity of Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase

All present enzymatic activity of Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase:
2.7.1.11;

Protein crystallography data

The structure of Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase, PDB code: 3u39 was solved by R.Mosser, M.C.M.Reddy, J.B.Bruning, J.C.Sacchettini, G.D.Reinhart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.51 / 2.79
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 201.909, 113.383, 76.627, 90.00, 104.03, 90.00
R / Rfree (%) 19.9 / 26

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase (pdb code 3u39). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase, PDB code: 3u39:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 3u39

Go back to Calcium Binding Sites List in 3u39
Calcium binding site 1 out of 5 in the Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca320

b:85.1
occ:1.00
 O B:HOH394 3.1 46.6 1.0
O A:HOH393 4.0 38.4 1.0
CB A:ASN144 4.5 30.8 1.0
CG A:ASN144 4.7 31.4 1.0
CG2 A:THR257 4.8 29.8 1.0
CG2 B:THR257 4.8 29.6 1.0
CG B:ASN144 4.8 34.0 1.0
OD1 B:ASN144 4.9 28.7 1.0
CB B:ASN144 4.9 34.7 1.0
ND2 A:ASN144 4.9 32.2 1.0

Calcium binding site 2 out of 5 in 3u39

Go back to Calcium Binding Sites List in 3u39
Calcium binding site 2 out of 5 in the Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca321

b:69.0
occ:1.00
 OD2 A:ASP155 3.1 40.1 1.0
OD1 A:ASP155 3.4 34.3 1.0
N D:GLY64 3.4 35.9 1.0
CG A:ASP155 3.6 36.8 1.0
CA D:ARG63 4.1 34.1 1.0
CA D:GLY64 4.2 33.3 1.0
C D:ARG63 4.2 33.1 1.0
O A:HOH398 4.3 35.7 1.0
CG D:ARG63 4.4 48.6 1.0
O D:HIS62 4.5 34.1 1.0
N D:SER255 4.7 28.9 1.0
C D:GLY254 4.7 28.3 1.0
O D:GLY254 4.8 25.6 1.0
NE2 B:HIS62 4.8 40.6 1.0
CB D:ARG63 4.9 42.3 1.0
O D:HOH381 4.9 48.7 1.0
CD2 B:HIS62 4.9 37.8 1.0
CA D:SER255 4.9 24.7 1.0
C D:GLY64 5.0 32.1 1.0
O D:GLY64 5.0 35.2 1.0

Calcium binding site 3 out of 5 in 3u39

Go back to Calcium Binding Sites List in 3u39
Calcium binding site 3 out of 5 in the Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca320

b:73.3
occ:1.00
 OD2 B:ASP155 3.3 42.7 1.0
OD1 B:ASP155 3.4 33.8 1.0
N C:GLY64 3.5 36.0 1.0
CG B:ASP155 3.8 37.2 1.0
CA C:ARG63 4.0 37.9 1.0
C C:ARG63 4.3 37.0 1.0
N C:SER255 4.4 24.4 1.0
O C:HIS62 4.4 30.6 1.0
CA C:GLY64 4.4 33.5 1.0
CB C:ARG63 4.5 37.9 1.0
CG C:ARG63 4.6 52.3 1.0
CA C:SER255 4.7 29.0 1.0
C C:GLY254 4.7 27.0 1.0
CB C:SER255 4.8 26.3 1.0
NE2 A:HIS62 4.9 41.0 1.0

Calcium binding site 4 out of 5 in 3u39

Go back to Calcium Binding Sites List in 3u39
Calcium binding site 4 out of 5 in the Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca320

b:73.7
occ:1.00
 OD1 C:ASP155 3.3 42.3 1.0
OD2 C:ASP155 3.4 39.8 1.0
N B:GLY64 3.6 37.1 1.0
CG C:ASP155 3.7 41.2 1.0
O C:HOH351 3.8 48.4 1.0
CA B:ARG63 4.2 37.4 1.0
N B:SER255 4.4 26.1 1.0
CA B:GLY64 4.4 35.0 1.0
C B:ARG63 4.4 35.3 1.0
O B:HIS62 4.5 28.7 1.0
C B:GLY254 4.6 27.7 1.0
CG B:ARG63 4.6 45.6 1.0
CA B:SER255 4.7 28.0 1.0
CE1 D:HIS62 4.8 47.5 1.0
CB B:ARG63 4.8 40.5 1.0
CB B:SER255 4.8 26.1 1.0
O B:GLY254 4.8 31.6 1.0
ND1 D:HIS62 5.0 41.1 1.0

Calcium binding site 5 out of 5 in 3u39

Go back to Calcium Binding Sites List in 3u39
Calcium binding site 5 out of 5 in the Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of the Apo Bacillus Stearothermophilus Phosphofructokinase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca321

b:75.5
occ:1.00
 OD2 D:ASP307 3.1 43.2 1.0
O C:ASN289 3.2 41.6 1.0
NH2 C:ARG266 3.2 35.7 1.0
O C:HOH389 3.9 47.8 1.0
CZ C:ARG266 4.1 44.6 1.0
NH1 C:ARG266 4.1 44.1 1.0
CG D:ASP307 4.1 36.4 1.0
C C:ASN289 4.3 43.5 1.0
O C:HOH397 4.3 43.7 1.0
ND2 C:ASN289 4.3 39.7 1.0
O C:HOH375 4.4 50.1 1.0
OD1 C:ASN289 4.4 45.0 1.0
CG C:ASN289 4.4 38.0 1.0
CB D:ASP307 4.6 33.3 1.0
CA C:GLN290 4.9 37.2 1.0

Reference:

R.Mosser, M.C.Reddy, J.B.Bruning, J.C.Sacchettini, G.D.Reinhart. Structure of the Apo Form of Bacillus Stearothermophilus Phosphofructokinase. Biochemistry V. 51 769 2012.
ISSN: ISSN 0006-2960
PubMed: 22212099
DOI: 10.1021/BI201548P
Page generated: Sat Jul 13 19:58:48 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy