Calcium in PDB 3v03: Crystal Structure of Bovine Serum Albumin

The structure of Crystal Structure of Bovine Serum Albumin, PDB code: 3v03 was solved by K.A.Majorek, P.J.Porebski, M.Chruszcz, S.C.Almo, W.Minor, New Yorkstructural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	215.661, 45.096, 142.408, 90.00, 114.01, 90.00
R / Rfree (%)	20.2 / 25.6

The binding sites of Calcium atom in the Crystal Structure of Bovine Serum Albumin (pdb code 3v03). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Crystal Structure of Bovine Serum Albumin, PDB code: 3v03:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Crystal Structure of Bovine Serum Albumin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Bovine Serum Albumin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca584 b:80.5 occ:1.00 O A:HOH591 2.3 61.2 1.0 OE2 A:GLU251 2.4 71.2 1.0 O A:HOH589 2.5 69.0 1.0 OD2 A:ASP248 2.5 72.7 1.0 OE2 A:GLU6 2.5 71.8 1.0 O A:HOH590 3.3 52.5 1.0 CD A:GLU6 3.5 67.5 1.0 CD A:GLU251 3.6 61.5 1.0 CG A:ASP248 3.7 64.1 1.0 OE1 A:GLU6 3.9 67.7 1.0 OE1 A:GLU243 4.1 76.9 1.0 NH2 A:ARG10 4.3 66.1 1.0 OE1 A:GLU251 4.4 69.8 1.0 OD1 A:ASP248 4.4 61.1 1.0 CB A:GLU251 4.4 54.6 1.0 CG A:GLU251 4.5 57.2 1.0 CB A:ASP248 4.7 58.7 1.0 CG A:GLU6 4.7 64.0 1.0 OE2 A:GLU243 4.7 82.0 1.0 CD A:GLU243 4.7 70.8 1.0

Calcium binding site 2 out of 6 in the Crystal Structure of Bovine Serum Albumin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Bovine Serum Albumin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca585 b:77.5 occ:1.00 O A:HOH592 2.3 91.5 1.0 O A:HOH604 2.4 66.6 1.0 O A:SER109 2.4 74.4 1.0 O A:HOH593 2.4 62.2 1.0 OD2 A:ASP111 2.5 0.5 1.0 OG A:SER109 2.6 77.5 1.0 CG A:ASP111 3.3 97.6 1.0 OD1 A:ASP111 3.4 0.2 1.0 C A:SER109 3.5 66.4 1.0 CB A:SER109 3.6 68.7 1.0 OD1 A:ASP107 4.2 59.0 1.0 CA A:SER109 4.2 66.5 1.0 OD2 A:ASP107 4.5 66.1 1.0 N A:PRO110 4.6 64.4 1.0 CB A:ASP111 4.7 90.4 1.0 CG A:ASP107 4.8 59.7 1.0 C A:PRO110 4.9 69.0 1.0 N A:ASP111 4.9 76.8 1.0 N A:SER109 4.9 62.1 1.0 CA A:PRO110 4.9 63.9 1.0

Calcium binding site 3 out of 6 in the Crystal Structure of Bovine Serum Albumin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Bovine Serum Albumin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca586 b:76.8 occ:1.00 O A:HOH607 2.3 73.9 1.0 OD1 A:ASP254 2.4 72.8 1.0 OD2 A:ASP13 2.4 89.6 1.0 O A:HOH605 2.6 57.0 1.0 OD1 A:ASP258 2.6 77.2 1.0 OD2 A:ASP258 2.9 74.5 1.0 CG A:ASP258 3.1 69.1 1.0 CG A:ASP254 3.2 75.8 1.0 OD2 A:ASP254 3.3 83.1 1.0 CG A:ASP13 3.4 81.0 1.0 NE2 A:HIS9 4.1 98.5 1.0 CB A:ASP13 4.1 74.2 1.0 OD1 A:ASP13 4.3 86.4 1.0 O A:ASP254 4.5 52.5 1.0 CB A:ASP254 4.6 64.8 1.0 CB A:ASP258 4.6 65.7 1.0 C A:ASP254 4.9 57.3 1.0 CD2 A:HIS9 5.0 95.5 1.0

Calcium binding site 4 out of 6 in the Crystal Structure of Bovine Serum Albumin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Bovine Serum Albumin within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca584 b:76.6 occ:1.00 O B:HOH590 2.3 78.6 1.0 O B:HOH589 2.4 82.3 1.0 O B:SER109 2.4 75.7 1.0 O B:HOH591 2.4 69.7 1.0 O B:HOH592 2.4 59.2 1.0 OD2 B:ASP111 2.5 91.0 1.0 OG B:SER109 2.8 70.8 1.0 CG B:ASP111 3.2 87.3 1.0 OD1 B:ASP111 3.3 88.5 1.0 C B:SER109 3.6 66.1 1.0 CB B:SER109 3.7 65.1 1.0 CA B:SER109 4.3 64.8 1.0 OD1 B:ASP107 4.3 58.0 1.0 OD2 B:ASP107 4.6 60.0 1.0 N B:PRO110 4.6 64.8 1.0 CB B:ASP111 4.7 84.2 1.0 N B:ASP111 4.8 71.4 1.0 C B:PRO110 4.8 68.0 1.0 CG B:ASP107 4.9 57.6 1.0 CA B:PRO110 4.9 65.3 1.0

Calcium binding site 5 out of 6 in the Crystal Structure of Bovine Serum Albumin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Bovine Serum Albumin within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca585 b:70.6 occ:1.00 O B:HOH607 2.4 72.8 1.0 OD2 B:ASP248 2.4 67.4 1.0 OE2 B:GLU251 2.4 50.0 1.0 OE1 B:GLU243 2.5 77.1 1.0 O B:HOH606 2.5 73.6 1.0 CD B:GLU243 3.2 71.2 1.0 OE2 B:GLU243 3.2 73.0 1.0 CG B:ASP248 3.4 63.2 1.0 O B:HOH603 3.6 50.8 1.0 CD B:GLU251 3.6 48.0 1.0 CB B:ASP248 3.9 59.1 1.0 OE2 B:GLU6 4.3 73.0 1.0 OE1 B:GLU251 4.4 50.7 1.0 CB B:GLU251 4.4 44.3 1.0 OD1 B:ASP248 4.5 61.4 1.0 CG B:GLU251 4.6 45.9 1.0 CG B:GLU243 4.7 62.5 1.0 NE2 B:HIS67 4.7 66.3 1.0 CD2 B:HIS67 4.8 63.4 1.0

Calcium binding site 6 out of 6 in the Crystal Structure of Bovine Serum Albumin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Bovine Serum Albumin within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca586 b:70.5 occ:1.00 O B:HOH593 2.3 81.0 1.0 OD2 B:ASP13 2.4 71.5 1.0 O B:HOH594 2.4 61.8 1.0 OD1 B:ASP254 2.4 66.6 1.0 OD1 B:ASP258 2.5 61.8 1.0 OD2 B:ASP258 3.0 59.0 1.0 CG B:ASP258 3.1 57.6 1.0 CG B:ASP254 3.3 56.2 1.0 CG B:ASP13 3.4 69.7 1.0 OD2 B:ASP254 3.5 53.9 1.0 NE2 B:HIS9 4.2 74.1 1.0 CB B:ASP13 4.2 62.9 1.0 OD1 B:ASP13 4.2 75.5 1.0 O B:ASP254 4.5 52.5 1.0 CB B:ASP258 4.6 55.7 1.0 CB B:ASP254 4.7 54.1 1.0 C B:ASP254 5.0 50.4 1.0

K.A.Majorek, P.J.Porebski, A.Dayal, M.D.Zimmerman, K.Jablonska, A.J.Stewart, M.Chruszcz, W.Minor. Structural and Immunologic Characterization of Bovine, Horse, and Rabbit Serum Albumins. Mol.Immunol. V. 52 174 2012.
ISSN: ISSN 0161-5890
PubMed: 22677715
DOI: 10.1016/J.MOLIMM.2012.05.011