Calcium in PDB 3wiv: Crystal Structure of Pro-S324A/D356A
Protein crystallography data
The structure of Crystal Structure of Pro-S324A/D356A, PDB code: 3wiv
was solved by
R.Uehara,
C.Angkawidjaja,
Y.Koga,
S.Kanaya,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
43.29 /
1.90
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
92.849,
119.102,
119.806,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
17.5 /
22
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Pro-S324A/D356A
(pdb code 3wiv). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 18 binding sites of Calcium where determined in the
Crystal Structure of Pro-S324A/D356A, PDB code: 3wiv:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 18 in 3wiv
Go back to
Calcium Binding Sites List in 3wiv
Calcium binding site 1 out
of 18 in the Crystal Structure of Pro-S324A/D356A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Pro-S324A/D356A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1001
b:17.3
occ:1.00
|
O
|
A:VAL170
|
2.2
|
16.1
|
1.0
|
|
O
|
A:ILE168
|
2.3
|
17.1
|
1.0
|
|
O
|
A:LEU164
|
2.3
|
14.4
|
1.0
|
|
OD1
|
A:ASN166
|
2.4
|
19.6
|
1.0
|
|
OD1
|
A:ASP124
|
2.4
|
19.4
|
1.0
|
|
OE1
|
A:GLN84
|
2.5
|
17.1
|
1.0
|
|
OD2
|
A:ASP124
|
2.5
|
15.0
|
1.0
|
|
CG
|
A:ASP124
|
2.9
|
15.5
|
1.0
|
|
CG
|
A:ASN166
|
3.3
|
15.7
|
1.0
|
|
C
|
A:VAL170
|
3.4
|
15.5
|
1.0
|
|
CD
|
A:GLN84
|
3.5
|
18.0
|
1.0
|
|
C
|
A:LEU164
|
3.5
|
17.4
|
1.0
|
|
C
|
A:ILE168
|
3.5
|
18.5
|
1.0
|
|
N
|
A:VAL170
|
3.7
|
15.0
|
1.0
|
|
ND2
|
A:ASN166
|
3.8
|
15.1
|
1.0
|
|
CG
|
A:GLN84
|
3.9
|
16.3
|
1.0
|
|
N
|
A:ASN166
|
4.0
|
17.9
|
1.0
|
|
C
|
A:GLY169
|
4.2
|
17.8
|
1.0
|
|
CA
|
A:VAL170
|
4.2
|
16.2
|
1.0
|
|
N
|
A:LEU164
|
4.3
|
14.9
|
1.0
|
|
CG1
|
A:ILE168
|
4.3
|
23.4
|
1.0
|
|
CA
|
A:GLY169
|
4.3
|
14.2
|
1.0
|
|
CA
|
A:LEU164
|
4.4
|
15.7
|
1.0
|
|
N
|
A:ILE168
|
4.4
|
19.8
|
1.0
|
|
N
|
A:VAL171
|
4.4
|
17.6
|
1.0
|
|
N
|
A:GLY169
|
4.4
|
15.1
|
1.0
|
|
CB
|
A:ASP124
|
4.4
|
18.3
|
1.0
|
|
N
|
A:ASN165
|
4.4
|
17.2
|
1.0
|
|
CA
|
A:ASN165
|
4.5
|
19.4
|
1.0
|
|
CA
|
A:ILE168
|
4.5
|
18.9
|
1.0
|
|
CA
|
A:VAL171
|
4.5
|
16.5
|
1.0
|
|
CB
|
A:GLN84
|
4.5
|
20.1
|
1.0
|
|
CB
|
A:ASN166
|
4.6
|
18.8
|
1.0
|
|
CB
|
A:LEU164
|
4.7
|
15.6
|
1.0
|
|
NE2
|
A:GLN84
|
4.7
|
19.2
|
1.0
|
|
C
|
A:ASN165
|
4.7
|
20.0
|
1.0
|
|
CA
|
A:ASN166
|
4.7
|
18.7
|
1.0
|
|
CB
|
A:VAL171
|
4.8
|
15.3
|
1.0
|
|
C
|
A:ASN166
|
4.8
|
20.8
|
1.0
|
|
C
|
A:ALA163
|
4.8
|
15.0
|
1.0
|
|
O
|
A:ASN166
|
4.9
|
17.7
|
1.0
|
|
Calcium binding site 2 out
of 18 in 3wiv
Go back to
Calcium Binding Sites List in 3wiv
Calcium binding site 2 out
of 18 in the Crystal Structure of Pro-S324A/D356A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Pro-S324A/D356A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1002
b:23.1
occ:1.00
|
OD2
|
A:ASP226
|
2.2
|
21.2
|
1.0
|
|
OD1
|
A:ASP208
|
2.3
|
19.9
|
1.0
|
|
O
|
A:VAL210
|
2.3
|
22.2
|
1.0
|
|
O
|
A:LEU205
|
2.3
|
19.5
|
1.0
|
|
O
|
A:HOH1159
|
2.3
|
18.9
|
1.0
|
|
O
|
A:HOH1158
|
2.4
|
17.3
|
1.0
|
|
CG
|
A:ASP208
|
3.2
|
23.8
|
1.0
|
|
CG
|
A:ASP226
|
3.3
|
19.3
|
1.0
|
|
C
|
A:LEU205
|
3.4
|
19.6
|
1.0
|
|
C
|
A:VAL210
|
3.5
|
22.0
|
1.0
|
|
OD2
|
A:ASP208
|
3.6
|
26.0
|
1.0
|
|
N
|
A:VAL210
|
3.9
|
19.6
|
1.0
|
|
OD1
|
A:ASP226
|
3.9
|
20.9
|
1.0
|
|
N
|
A:ASP226
|
3.9
|
20.4
|
1.0
|
|
O
|
A:ALA211
|
4.2
|
20.6
|
1.0
|
|
CA
|
A:VAL210
|
4.2
|
21.4
|
1.0
|
|
CA
|
A:LEU205
|
4.2
|
18.3
|
1.0
|
|
CG1
|
A:VAL210
|
4.3
|
27.3
|
1.0
|
|
N
|
A:GLY206
|
4.3
|
17.1
|
1.0
|
|
CA
|
A:GLY206
|
4.4
|
17.9
|
1.0
|
|
O
|
A:ILE204
|
4.4
|
20.2
|
1.0
|
|
N
|
A:ALA227
|
4.4
|
19.1
|
1.0
|
|
N
|
A:GLY209
|
4.4
|
23.1
|
1.0
|
|
C
|
A:ASP226
|
4.4
|
20.9
|
1.0
|
|
N
|
A:ALA211
|
4.5
|
22.1
|
1.0
|
|
CA
|
A:ALA211
|
4.5
|
21.2
|
1.0
|
|
OD1
|
A:ASP225
|
4.5
|
21.8
|
1.0
|
|
C
|
A:ALA211
|
4.5
|
22.8
|
1.0
|
|
CB
|
A:ASP226
|
4.5
|
19.1
|
1.0
|
|
CA
|
A:ASP226
|
4.5
|
21.4
|
1.0
|
|
CB
|
A:ASP208
|
4.5
|
25.0
|
1.0
|
|
N
|
A:ASP208
|
4.5
|
22.6
|
1.0
|
|
C
|
A:GLY206
|
4.6
|
17.7
|
1.0
|
|
CA
|
A:ASP208
|
4.8
|
24.4
|
1.0
|
|
C
|
A:ASP208
|
4.8
|
24.0
|
1.0
|
|
O
|
A:GLY206
|
4.8
|
19.1
|
1.0
|
|
CB
|
A:ASP225
|
4.9
|
21.5
|
1.0
|
|
CB
|
A:VAL210
|
4.9
|
21.6
|
1.0
|
|
C
|
A:GLY209
|
4.9
|
21.4
|
1.0
|
|
C
|
A:ASP225
|
5.0
|
22.8
|
1.0
|
|
O
|
A:ASP226
|
5.0
|
20.3
|
1.0
|
|
Calcium binding site 3 out
of 18 in 3wiv
Go back to
Calcium Binding Sites List in 3wiv
Calcium binding site 3 out
of 18 in the Crystal Structure of Pro-S324A/D356A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Pro-S324A/D356A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1003
b:25.4
occ:1.00
|
OD1
|
A:ASP222
|
2.2
|
24.2
|
1.0
|
|
OD2
|
A:ASP225
|
2.3
|
27.0
|
1.0
|
|
OD1
|
A:ASP212
|
2.3
|
25.4
|
1.0
|
|
OD1
|
A:ASP216
|
2.4
|
26.5
|
1.0
|
|
O
|
A:ILE218
|
2.4
|
25.7
|
1.0
|
|
OD2
|
A:ASP214
|
2.4
|
30.2
|
1.0
|
|
CG
|
A:ASP216
|
3.3
|
32.5
|
1.0
|
|
CG
|
A:ASP222
|
3.4
|
20.7
|
1.0
|
|
CG
|
A:ASP212
|
3.4
|
28.6
|
1.0
|
|
CG
|
A:ASP225
|
3.5
|
22.2
|
1.0
|
|
CG
|
A:ASP214
|
3.5
|
30.3
|
1.0
|
|
C
|
A:ILE218
|
3.6
|
24.7
|
1.0
|
|
OD2
|
A:ASP216
|
3.7
|
30.8
|
1.0
|
|
OD1
|
A:ASP214
|
3.9
|
32.7
|
1.0
|
|
N
|
A:ILE218
|
4.0
|
27.5
|
1.0
|
|
CB
|
A:ASP222
|
4.0
|
24.7
|
1.0
|
|
CA
|
A:CA1004
|
4.1
|
34.4
|
1.0
|
|
OD2
|
A:ASP212
|
4.2
|
28.1
|
1.0
|
|
OD1
|
A:ASP225
|
4.2
|
21.8
|
1.0
|
|
CA
|
A:ASP212
|
4.2
|
26.0
|
1.0
|
|
CA
|
A:ILE218
|
4.2
|
25.8
|
1.0
|
|
N
|
A:ASP216
|
4.2
|
32.9
|
1.0
|
|
CB
|
A:ASP212
|
4.3
|
27.3
|
1.0
|
|
N
|
A:ASP214
|
4.3
|
32.0
|
1.0
|
|
CB
|
A:ILE218
|
4.4
|
26.2
|
1.0
|
|
OD2
|
A:ASP222
|
4.4
|
22.3
|
1.0
|
|
C
|
A:ASP212
|
4.4
|
28.5
|
1.0
|
|
CB
|
A:ASP225
|
4.5
|
21.5
|
1.0
|
|
N
|
A:LYS213
|
4.5
|
27.9
|
1.0
|
|
CB
|
A:ASP216
|
4.6
|
30.8
|
1.0
|
|
N
|
A:GLY215
|
4.6
|
34.1
|
1.0
|
|
N
|
A:ILE219
|
4.6
|
23.5
|
1.0
|
|
N
|
A:GLY217
|
4.7
|
30.7
|
1.0
|
|
CA
|
A:ASP216
|
4.8
|
31.1
|
1.0
|
|
CB
|
A:ASP214
|
4.8
|
33.1
|
1.0
|
|
CA
|
A:ILE219
|
4.8
|
22.4
|
1.0
|
|
CA
|
A:ASP214
|
4.9
|
32.8
|
1.0
|
|
C
|
A:ASP216
|
5.0
|
31.6
|
1.0
|
|
C
|
A:ASP214
|
5.0
|
33.9
|
1.0
|
|
Calcium binding site 4 out
of 18 in 3wiv
Go back to
Calcium Binding Sites List in 3wiv
Calcium binding site 4 out
of 18 in the Crystal Structure of Pro-S324A/D356A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Pro-S324A/D356A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1004
b:34.4
occ:1.00
|
OD2
|
A:ASP224
|
2.1
|
30.1
|
1.0
|
|
OD2
|
A:ASP216
|
2.2
|
30.8
|
1.0
|
|
OD1
|
A:ASP214
|
2.3
|
32.7
|
1.0
|
|
OD2
|
A:ASP222
|
2.6
|
22.3
|
1.0
|
|
O
|
A:HOH1207
|
2.6
|
43.0
|
1.0
|
|
OD1
|
A:ASP222
|
2.6
|
24.2
|
1.0
|
|
CG
|
A:ASP222
|
2.9
|
20.7
|
1.0
|
|
CG
|
A:ASP224
|
3.1
|
28.5
|
1.0
|
|
CG
|
A:ASP216
|
3.3
|
32.5
|
1.0
|
|
CG
|
A:ASP214
|
3.3
|
30.3
|
1.0
|
|
CB
|
A:ASP224
|
3.5
|
26.6
|
1.0
|
|
OD2
|
A:ASP214
|
3.7
|
30.2
|
1.0
|
|
OD1
|
A:ASP216
|
3.8
|
26.5
|
1.0
|
|
CA
|
A:CA1003
|
4.1
|
25.4
|
1.0
|
|
O
|
A:HOH1314
|
4.2
|
43.5
|
1.0
|
|
OD1
|
A:ASP224
|
4.3
|
30.7
|
1.0
|
|
CB
|
A:ASP222
|
4.3
|
24.7
|
1.0
|
|
CB
|
A:ASP216
|
4.4
|
30.8
|
1.0
|
|
CB
|
A:ASP214
|
4.7
|
33.1
|
1.0
|
|
N
|
A:ASP224
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:ASP224
|
4.8
|
24.8
|
1.0
|
|
Calcium binding site 5 out
of 18 in 3wiv
Go back to
Calcium Binding Sites List in 3wiv
Calcium binding site 5 out
of 18 in the Crystal Structure of Pro-S324A/D356A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Pro-S324A/D356A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1005
b:20.1
occ:1.00
|
O
|
A:VAL108
|
2.3
|
20.6
|
1.0
|
|
O
|
A:ALA227
|
2.3
|
17.8
|
1.0
|
|
OE1
|
A:GLN110
|
2.4
|
18.9
|
1.0
|
|
OE1
|
A:GLU229
|
2.5
|
23.4
|
1.0
|
|
OE2
|
A:GLU229
|
2.5
|
20.1
|
1.0
|
|
O
|
A:HOH1147
|
2.6
|
19.8
|
1.0
|
|
CD
|
A:GLU229
|
2.9
|
26.3
|
1.0
|
|
C
|
A:VAL108
|
3.5
|
19.9
|
1.0
|
|
CD
|
A:GLN110
|
3.5
|
21.3
|
1.0
|
|
C
|
A:ALA227
|
3.5
|
19.5
|
1.0
|
|
CG2
|
A:VAL108
|
3.9
|
20.4
|
1.0
|
|
NE2
|
A:GLN110
|
4.0
|
19.8
|
1.0
|
|
N
|
A:ALA227
|
4.1
|
19.1
|
1.0
|
|
N
|
A:GLN110
|
4.3
|
16.7
|
1.0
|
|
C
|
A:ASP226
|
4.3
|
20.9
|
1.0
|
|
CA
|
A:VAL108
|
4.4
|
21.7
|
1.0
|
|
CG
|
A:GLU229
|
4.4
|
19.7
|
1.0
|
|
CA
|
A:ALA227
|
4.4
|
19.1
|
1.0
|
|
N
|
A:ILE109
|
4.4
|
20.6
|
1.0
|
|
N
|
A:ALA228
|
4.5
|
19.0
|
1.0
|
|
CA
|
A:ALA228
|
4.5
|
17.9
|
1.0
|
|
CA
|
A:ILE109
|
4.5
|
18.3
|
1.0
|
|
C
|
A:ALA228
|
4.6
|
18.6
|
1.0
|
|
O
|
A:ASP225
|
4.6
|
21.8
|
1.0
|
|
CA
|
A:ASP226
|
4.6
|
21.4
|
1.0
|
|
C
|
A:ILE109
|
4.7
|
17.1
|
1.0
|
|
O
|
A:ASP226
|
4.7
|
20.3
|
1.0
|
|
N
|
A:GLY221
|
4.7
|
22.2
|
1.0
|
|
N
|
A:GLU229
|
4.7
|
18.4
|
1.0
|
|
O
|
A:HOH1349
|
4.7
|
32.0
|
1.0
|
|
CG
|
A:GLN110
|
4.8
|
16.1
|
1.0
|
|
CB
|
A:VAL108
|
4.8
|
20.8
|
1.0
|
|
CB
|
A:GLN110
|
4.8
|
17.8
|
1.0
|
|
CB
|
A:ALA227
|
4.9
|
19.4
|
1.0
|
|
O
|
A:ASP222
|
4.9
|
24.0
|
1.0
|
|
O
|
A:ALA228
|
5.0
|
18.2
|
1.0
|
|
Calcium binding site 6 out
of 18 in 3wiv
Go back to
Calcium Binding Sites List in 3wiv
Calcium binding site 6 out
of 18 in the Crystal Structure of Pro-S324A/D356A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Pro-S324A/D356A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1006
b:30.6
occ:1.00
|
O
|
A:LEU373
|
2.2
|
27.9
|
1.0
|
|
OD1
|
A:ASP372
|
2.3
|
32.3
|
1.0
|
|
O
|
A:PRO375
|
2.3
|
30.9
|
1.0
|
|
OD1
|
A:ASP379
|
2.4
|
27.9
|
1.0
|
|
O
|
A:GLY377
|
2.4
|
31.2
|
1.0
|
|
O
|
A:HOH1138
|
2.5
|
22.4
|
1.0
|
|
C
|
A:LEU373
|
3.4
|
28.3
|
1.0
|
|
CG
|
A:ASP372
|
3.5
|
33.0
|
1.0
|
|
C
|
A:PRO375
|
3.5
|
33.0
|
1.0
|
|
CG
|
A:ASP379
|
3.6
|
30.5
|
1.0
|
|
C
|
A:GLY377
|
3.6
|
31.9
|
1.0
|
|
N
|
A:LEU373
|
3.9
|
28.7
|
1.0
|
|
N
|
A:GLY377
|
3.9
|
33.8
|
1.0
|
|
OD2
|
A:ASP372
|
4.1
|
35.1
|
1.0
|
|
N
|
A:PRO375
|
4.1
|
33.0
|
1.0
|
|
CB
|
A:ASP379
|
4.1
|
29.4
|
1.0
|
|
C
|
A:GLY374
|
4.1
|
31.5
|
1.0
|
|
C
|
A:THR376
|
4.2
|
34.8
|
1.0
|
|
N
|
A:ASP379
|
4.2
|
29.1
|
1.0
|
|
CA
|
A:LEU373
|
4.3
|
27.8
|
1.0
|
|
O
|
A:GLY374
|
4.3
|
32.6
|
1.0
|
|
CA
|
A:PRO375
|
4.3
|
33.1
|
1.0
|
|
C
|
A:ASP372
|
4.4
|
30.3
|
1.0
|
|
O
|
A:GLY383
|
4.4
|
24.8
|
1.0
|
|
CA
|
A:GLY377
|
4.4
|
33.2
|
1.0
|
|
N
|
A:GLY374
|
4.4
|
28.8
|
1.0
|
|
N
|
A:THR376
|
4.5
|
32.8
|
1.0
|
|
CA
|
A:THR376
|
4.5
|
33.6
|
1.0
|
|
C
|
A:TRP378
|
4.5
|
30.5
|
1.0
|
|
CA
|
A:GLY374
|
4.6
|
31.0
|
1.0
|
|
OD2
|
A:ASP379
|
4.6
|
30.6
|
1.0
|
|
N
|
A:TRP378
|
4.6
|
31.1
|
1.0
|
|
O
|
A:THR376
|
4.6
|
33.8
|
1.0
|
|
CA
|
A:ASP372
|
4.7
|
29.3
|
1.0
|
|
CB
|
A:ASP372
|
4.7
|
30.6
|
1.0
|
|
CD
|
A:PRO375
|
4.8
|
33.0
|
1.0
|
|
CA
|
A:ASP379
|
4.8
|
29.4
|
1.0
|
|
CB
|
A:TYR382
|
4.8
|
24.6
|
1.0
|
|
CA
|
A:TRP378
|
4.8
|
30.2
|
1.0
|
|
CD1
|
A:TYR382
|
4.8
|
29.5
|
1.0
|
|
CB
|
A:PRO375
|
4.9
|
33.8
|
1.0
|
|
O
|
A:TRP378
|
5.0
|
30.9
|
1.0
|
|
O
|
A:ASP372
|
5.0
|
32.2
|
1.0
|
|
Calcium binding site 7 out
of 18 in 3wiv
Go back to
Calcium Binding Sites List in 3wiv
Calcium binding site 7 out
of 18 in the Crystal Structure of Pro-S324A/D356A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Pro-S324A/D356A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1001
b:25.2
occ:1.00
|
O
|
B:VAL170
|
2.2
|
21.6
|
1.0
|
|
O
|
B:LEU164
|
2.3
|
23.4
|
1.0
|
|
O
|
B:ILE168
|
2.3
|
31.6
|
1.0
|
|
OD2
|
B:ASP124
|
2.5
|
22.1
|
1.0
|
|
OD1
|
B:ASP124
|
2.5
|
24.6
|
1.0
|
|
OE1
|
B:GLN84
|
2.5
|
24.3
|
1.0
|
|
OD1
|
B:ASN166
|
2.6
|
27.0
|
1.0
|
|
CG
|
B:ASP124
|
2.9
|
24.2
|
1.0
|
|
C
|
B:VAL170
|
3.4
|
22.9
|
1.0
|
|
CG
|
B:ASN166
|
3.4
|
26.4
|
1.0
|
|
CD
|
B:GLN84
|
3.5
|
25.2
|
1.0
|
|
C
|
B:LEU164
|
3.5
|
24.2
|
1.0
|
|
C
|
B:ILE168
|
3.6
|
33.8
|
1.0
|
|
N
|
B:VAL170
|
3.7
|
25.1
|
1.0
|
|
CG
|
B:GLN84
|
3.8
|
27.5
|
1.0
|
|
ND2
|
B:ASN166
|
3.9
|
24.7
|
1.0
|
|
C
|
B:GLY169
|
4.1
|
26.9
|
1.0
|
|
N
|
B:ASN166
|
4.1
|
29.0
|
1.0
|
|
CA
|
B:VAL170
|
4.2
|
21.7
|
1.0
|
|
CG1
|
B:ILE168
|
4.3
|
34.9
|
1.0
|
|
CB
|
B:ASP124
|
4.4
|
24.7
|
1.0
|
|
N
|
B:ILE168
|
4.4
|
35.2
|
1.0
|
|
CA
|
B:LEU164
|
4.4
|
23.6
|
1.0
|
|
N
|
B:VAL171
|
4.4
|
21.3
|
1.0
|
|
CA
|
B:GLY169
|
4.4
|
30.1
|
1.0
|
|
N
|
B:GLY169
|
4.4
|
31.7
|
1.0
|
|
N
|
B:LEU164
|
4.5
|
21.9
|
1.0
|
|
CB
|
B:GLN84
|
4.5
|
35.8
|
1.0
|
|
N
|
B:ASN165
|
4.5
|
24.7
|
1.0
|
|
CA
|
B:VAL171
|
4.5
|
20.7
|
1.0
|
|
CA
|
B:ASN165
|
4.6
|
28.2
|
1.0
|
|
CA
|
B:ILE168
|
4.6
|
33.9
|
1.0
|
|
CB
|
B:LEU164
|
4.6
|
22.7
|
1.0
|
|
NE2
|
B:GLN84
|
4.6
|
26.5
|
1.0
|
|
CB
|
B:ASN166
|
4.7
|
30.1
|
1.0
|
|
O
|
B:GLY169
|
4.7
|
26.7
|
1.0
|
|
CB
|
B:VAL171
|
4.8
|
18.7
|
1.0
|
|
C
|
B:ASN165
|
4.8
|
28.4
|
1.0
|
|
C
|
B:ASN166
|
4.8
|
32.1
|
1.0
|
|
CA
|
B:ASN166
|
4.8
|
30.1
|
1.0
|
|
C
|
B:ALA163
|
4.8
|
19.2
|
1.0
|
|
O
|
B:ASN166
|
4.8
|
30.9
|
1.0
|
|
CB
|
B:ALA163
|
4.9
|
16.6
|
1.0
|
|
Calcium binding site 8 out
of 18 in 3wiv
Go back to
Calcium Binding Sites List in 3wiv
Calcium binding site 8 out
of 18 in the Crystal Structure of Pro-S324A/D356A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Pro-S324A/D356A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1002
b:21.4
occ:1.00
|
OD2
|
B:ASP226
|
2.1
|
21.4
|
1.0
|
|
O
|
B:VAL210
|
2.2
|
22.7
|
1.0
|
|
O
|
B:LEU205
|
2.2
|
20.7
|
1.0
|
|
O
|
B:HOH1160
|
2.4
|
21.8
|
1.0
|
|
O
|
B:HOH1137
|
2.4
|
20.6
|
1.0
|
|
OD1
|
B:ASP208
|
2.4
|
22.8
|
1.0
|
|
CG
|
B:ASP226
|
3.3
|
24.5
|
1.0
|
|
C
|
B:LEU205
|
3.3
|
22.1
|
1.0
|
|
CG
|
B:ASP208
|
3.3
|
30.6
|
1.0
|
|
C
|
B:VAL210
|
3.3
|
22.3
|
1.0
|
|
OD2
|
B:ASP208
|
3.6
|
30.0
|
1.0
|
|
N
|
B:VAL210
|
3.8
|
23.3
|
1.0
|
|
OD1
|
B:ASP226
|
3.9
|
25.1
|
1.0
|
|
N
|
B:ASP226
|
3.9
|
18.5
|
1.0
|
|
CA
|
B:VAL210
|
4.1
|
23.6
|
1.0
|
|
CA
|
B:LEU205
|
4.1
|
20.4
|
1.0
|
|
O
|
B:ILE204
|
4.2
|
17.9
|
1.0
|
|
N
|
B:GLY206
|
4.2
|
19.8
|
1.0
|
|
O
|
B:ALA211
|
4.2
|
21.5
|
1.0
|
|
N
|
B:ALA227
|
4.3
|
19.1
|
1.0
|
|
N
|
B:ALA211
|
4.3
|
24.0
|
1.0
|
|
CA
|
B:GLY206
|
4.4
|
22.4
|
1.0
|
|
N
|
B:GLY209
|
4.4
|
25.8
|
1.0
|
|
OD1
|
B:ASP225
|
4.5
|
25.2
|
1.0
|
|
CB
|
B:ASP226
|
4.5
|
23.9
|
1.0
|
|
C
|
B:ASP226
|
4.5
|
20.3
|
1.0
|
|
CA
|
B:ALA211
|
4.5
|
23.3
|
1.0
|
|
CA
|
B:ASP226
|
4.5
|
20.8
|
1.0
|
|
C
|
B:ALA211
|
4.5
|
22.7
|
1.0
|
|
CB
|
B:ASP208
|
4.6
|
29.3
|
1.0
|
|
CB
|
B:VAL210
|
4.6
|
22.5
|
1.0
|
|
C
|
B:GLY206
|
4.8
|
23.4
|
1.0
|
|
N
|
B:ASP208
|
4.8
|
29.2
|
1.0
|
|
C
|
B:ASP208
|
4.9
|
28.4
|
1.0
|
|
C
|
B:GLY209
|
4.9
|
25.6
|
1.0
|
|
CA
|
B:ASP208
|
4.9
|
28.1
|
1.0
|
|
O
|
B:GLY206
|
4.9
|
25.4
|
1.0
|
|
CB
|
B:ASP225
|
5.0
|
18.5
|
1.0
|
|
C
|
B:ASP225
|
5.0
|
18.9
|
1.0
|
|
Calcium binding site 9 out
of 18 in 3wiv
Go back to
Calcium Binding Sites List in 3wiv
Calcium binding site 9 out
of 18 in the Crystal Structure of Pro-S324A/D356A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Pro-S324A/D356A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1003
b:22.5
occ:1.00
|
OD2
|
B:ASP225
|
2.2
|
21.6
|
1.0
|
|
OD1
|
B:ASP222
|
2.2
|
26.1
|
1.0
|
|
OD1
|
B:ASP212
|
2.3
|
24.7
|
1.0
|
|
O
|
B:ILE218
|
2.3
|
21.7
|
1.0
|
|
OD1
|
B:ASP216
|
2.4
|
28.9
|
1.0
|
|
OD2
|
B:ASP214
|
2.4
|
24.1
|
1.0
|
|
CG
|
B:ASP216
|
3.3
|
29.3
|
1.0
|
|
CG
|
B:ASP222
|
3.4
|
20.8
|
1.0
|
|
CG
|
B:ASP225
|
3.4
|
20.1
|
1.0
|
|
CG
|
B:ASP212
|
3.4
|
26.8
|
1.0
|
|
CG
|
B:ASP214
|
3.5
|
29.8
|
1.0
|
|
C
|
B:ILE218
|
3.5
|
24.5
|
1.0
|
|
OD2
|
B:ASP216
|
3.8
|
24.6
|
1.0
|
|
OD1
|
B:ASP214
|
3.9
|
26.1
|
1.0
|
|
CA
|
B:CA1004
|
4.0
|
40.6
|
1.0
|
|
N
|
B:ILE218
|
4.0
|
25.5
|
1.0
|
|
CB
|
B:ASP222
|
4.1
|
17.7
|
1.0
|
|
OD2
|
B:ASP212
|
4.2
|
28.1
|
1.0
|
|
CA
|
B:ILE218
|
4.2
|
24.8
|
1.0
|
|
N
|
B:ASP216
|
4.2
|
31.3
|
1.0
|
|
OD1
|
B:ASP225
|
4.2
|
25.2
|
1.0
|
|
CA
|
B:ASP212
|
4.3
|
24.3
|
1.0
|
|
CB
|
B:ASP212
|
4.3
|
22.9
|
1.0
|
|
OD2
|
B:ASP222
|
4.3
|
19.2
|
1.0
|
|
CB
|
B:ASP225
|
4.3
|
18.5
|
1.0
|
|
CB
|
B:ILE218
|
4.4
|
26.3
|
1.0
|
|
N
|
B:ASP214
|
4.5
|
28.3
|
1.0
|
|
C
|
B:ASP212
|
4.5
|
26.4
|
1.0
|
|
CB
|
B:ASP216
|
4.6
|
30.8
|
1.0
|
|
N
|
B:ILE219
|
4.6
|
20.9
|
1.0
|
|
N
|
B:LYS213
|
4.6
|
26.8
|
1.0
|
|
N
|
B:GLY215
|
4.7
|
30.9
|
1.0
|
|
CA
|
B:ILE219
|
4.7
|
19.7
|
1.0
|
|
N
|
B:GLY217
|
4.8
|
29.5
|
1.0
|
|
CA
|
B:ASP216
|
4.8
|
30.9
|
1.0
|
|
CB
|
B:ASP214
|
4.8
|
29.5
|
1.0
|
|
CA
|
B:ASP214
|
5.0
|
29.8
|
1.0
|
|
Calcium binding site 10 out
of 18 in 3wiv
Go back to
Calcium Binding Sites List in 3wiv
Calcium binding site 10 out
of 18 in the Crystal Structure of Pro-S324A/D356A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Pro-S324A/D356A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1004
b:40.6
occ:1.00
|
OD2
|
B:ASP216
|
2.4
|
24.6
|
1.0
|
|
OD1
|
B:ASP214
|
2.4
|
26.1
|
1.0
|
|
OD2
|
B:ASP222
|
2.5
|
19.2
|
1.0
|
|
OD1
|
B:ASP222
|
2.5
|
26.1
|
1.0
|
|
O
|
B:HOH1228
|
2.7
|
28.2
|
1.0
|
|
CG
|
B:ASP222
|
2.8
|
20.8
|
1.0
|
|
O
|
B:HOH1256
|
3.0
|
34.3
|
1.0
|
|
CG
|
B:ASP216
|
3.3
|
29.3
|
1.0
|
|
CG
|
B:ASP214
|
3.4
|
29.8
|
1.0
|
|
OD2
|
B:ASP214
|
3.7
|
24.1
|
1.0
|
|
OD2
|
B:ASP224
|
3.8
|
27.5
|
1.0
|
|
OD1
|
B:ASP216
|
3.8
|
28.9
|
1.0
|
|
CB
|
B:ASP224
|
4.0
|
20.9
|
1.0
|
|
CA
|
B:CA1003
|
4.0
|
22.5
|
1.0
|
|
CB
|
B:ASP222
|
4.2
|
17.7
|
1.0
|
|
CG
|
B:ASP224
|
4.3
|
22.2
|
1.0
|
|
CB
|
B:ASP216
|
4.4
|
30.8
|
1.0
|
|
N
|
B:ASP224
|
4.7
|
19.7
|
1.0
|
|
CB
|
B:ASP214
|
4.7
|
29.5
|
1.0
|
|
CD
|
B:PRO223
|
4.9
|
21.3
|
1.0
|
|
CA
|
B:ASP222
|
4.9
|
19.5
|
1.0
|
|
CA
|
B:ASP224
|
4.9
|
20.9
|
1.0
|
|
Reference:
R.Uehara,
C.Angkawidjaja,
Y.Koga,
S.Kanaya.
Requirement of the Insertion Sequence For Activation of Tk-Subtilisin To Be Published.
Page generated: Tue Jul 8 17:52:56 2025
|
