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Calcium in PDB 3wov: Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Paaglb-L, Q9V250_PYRAB, PAB2202) From Pyrococcus Abyssi

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Paaglb-L, Q9V250_PYRAB, PAB2202) From Pyrococcus Abyssi, PDB code: 3wov was solved by R.Matsuoka, J.Nyirenda, N.Maita, D.Kohda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.62 / 3.11
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 70.748, 70.748, 204.750, 90.00, 90.00, 120.00
R / Rfree (%) 22.8 / 26.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Paaglb-L, Q9V250_PYRAB, PAB2202) From Pyrococcus Abyssi (pdb code 3wov). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Paaglb-L, Q9V250_PYRAB, PAB2202) From Pyrococcus Abyssi, PDB code: 3wov:

Calcium binding site 1 out of 1 in 3wov

Go back to Calcium Binding Sites List in 3wov
Calcium binding site 1 out of 1 in the Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Paaglb-L, Q9V250_PYRAB, PAB2202) From Pyrococcus Abyssi


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Paaglb-L, Q9V250_PYRAB, PAB2202) From Pyrococcus Abyssi within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1001

b:33.4
occ:1.00
OE1 A:GLU557 2.5 71.5 1.0
O A:HIS799 2.5 72.0 1.0
OE2 A:GLU557 2.5 70.5 1.0
OE2 A:GLU802 2.6 84.9 1.0
O A:ALA767 2.7 80.2 1.0
CD A:GLU557 2.8 70.7 1.0
CD A:GLU802 3.1 85.6 1.0
OE1 A:GLU802 3.2 85.4 1.0
C A:ALA767 3.6 81.0 1.0
C A:HIS799 3.7 74.1 1.0
CG A:GLU557 4.3 70.2 1.0
N A:ALA767 4.3 82.5 1.0
CA A:PHE768 4.3 76.3 1.0
CG A:GLU802 4.3 87.2 1.0
N A:PHE768 4.3 77.9 1.0
CA A:HIS799 4.4 74.9 1.0
CB A:HIS799 4.5 74.8 1.0
CA A:ALA767 4.5 83.0 1.0
OG A:SER766 4.6 73.6 1.0
N A:LEU800 4.7 76.2 1.0
CD2 A:HIS799 4.7 75.1 1.0
CA A:LEU800 4.9 76.0 1.0
CG A:HIS799 4.9 76.1 1.0
CD A:LYS713 5.0 79.3 1.0
N A:GLY769 5.0 74.0 1.0

Reference:

R.Matsuoka, J.Nyirenda, N.Maita, D.Kohda. Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Paaglb-L, Q9V250_PYRAB, PAB2202) From Pyrococcus Abyssi To Be Published.
Page generated: Tue Jul 8 18:00:15 2025

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