Calcium in PDB 3zyi: NETRING2 in Complex with NGL2

The structure of NETRING2 in Complex with NGL2, PDB code: 3zyi was solved by E.Seiradake, C.H.Coles, P.V.Perestenko, K.Harlos, R.A.J.Mcilhinney, A.R.Aricescu, E.Y.Jones, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.95 / 2.60
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	75.420, 153.390, 158.730, 90.00, 90.00, 90.00
R / Rfree (%)	24.34 / 28.68

The binding sites of Calcium atom in the NETRING2 in Complex with NGL2 (pdb code 3zyi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the NETRING2 in Complex with NGL2, PDB code: 3zyi:

Calcium binding site 1 out of 1 in the NETRING2 in Complex with NGL2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of NETRING2 in Complex with NGL2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1349 b:54.5 occ:1.00 O B:LEU94 2.2 56.2 1.0 OE2 B:GLU99 2.2 84.5 1.0 O B:SER279 2.3 51.7 1.0 O B:THR105 2.5 59.9 1.0 OD1 B:ASP97 2.6 77.6 1.0 OG1 B:THR105 2.8 68.8 1.0 CD B:GLU99 3.0 93.3 1.0 C B:LEU94 3.4 57.0 1.0 C B:SER279 3.5 51.4 1.0 C B:THR105 3.6 60.9 1.0 CG B:GLU99 3.6 80.2 1.0 CG B:ASP97 3.8 72.5 1.0 OE1 B:GLU99 3.9 81.5 1.0 CB B:THR105 3.9 67.5 1.0 N B:THR105 4.0 61.1 1.0 O B:ASP97 4.0 66.3 1.0 CA B:THR105 4.0 59.9 1.0 CA B:SER279 4.2 47.8 1.0 CA B:LEU94 4.3 54.0 1.0 N B:MET95 4.3 53.4 1.0 OD1 B:ASN280 4.5 59.1 1.0 OD2 B:ASP97 4.5 73.0 1.0 CA B:MET95 4.5 52.9 1.0 C B:MET95 4.5 56.9 1.0 N B:ASN280 4.5 46.6 1.0 N B:ASP97 4.5 59.9 1.0 N B:PHE96 4.6 55.2 1.0 CB B:LEU94 4.7 53.7 1.0 N B:TYR106 4.7 55.9 1.0 CB B:SER279 4.7 50.8 1.0 CA B:ASN280 4.7 46.1 1.0 C B:ASP97 4.8 66.4 1.0 CB B:ASN280 4.8 46.0 1.0 CB B:ASP97 4.9 62.6 1.0 O B:MET95 4.9 55.6 1.0 CA B:ASP97 5.0 60.6 1.0

E.Seiradake, C.H.Coles, P.V.Perestenko, K.Harlos, R.A.J.Mcilhinney, A.R.Aricescu, E.Y.Jones. Structural Basis For Cell Surface Patterning Through Netring-Ngl Interactions Embo J. V. 30 4479 2011.
ISSN: ISSN 0261-4189
PubMed: 21946559
DOI: 10.1038/EMBOJ.2011.346