Calcium in PDB 4ci6: Mechanisms of Crippling Actin-Dependent Phagocytosis By Yopo

The structure of Mechanisms of Crippling Actin-Dependent Phagocytosis By Yopo, PDB code: 4ci6 was solved by W.L.Lee, J.M.Grimes, R.C.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.022 / 2.65
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	70.799, 121.850, 89.339, 90.00, 94.87, 90.00
R / Rfree (%)	18.56 / 22.01

The binding sites of Calcium atom in the Mechanisms of Crippling Actin-Dependent Phagocytosis By Yopo (pdb code 4ci6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Mechanisms of Crippling Actin-Dependent Phagocytosis By Yopo, PDB code: 4ci6:

Calcium binding site 1 out of 1 in the Mechanisms of Crippling Actin-Dependent Phagocytosis By Yopo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Mechanisms of Crippling Actin-Dependent Phagocytosis By Yopo within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1401 b:37.2 occ:1.00 O2B A:ATP1380 2.5 29.5 1.0 O1G A:ATP1380 2.5 44.6 1.0 O A:HOH2029 2.6 47.2 1.0 O A:HOH2005 2.7 40.0 1.0 O A:HOH2031 2.7 29.9 1.0 O A:HOH2003 2.7 50.4 1.0 O A:HOH2028 2.7 39.5 1.0 PG A:ATP1380 3.5 37.9 1.0 O2G A:ATP1380 3.5 44.3 1.0 PB A:ATP1380 3.7 32.4 1.0 OE1 A:GLN137 3.8 47.8 1.0 O3B A:ATP1380 4.1 40.9 1.0 O3A A:ATP1380 4.1 56.7 1.0 NZ A:LYS18 4.1 44.3 1.0 CD A:GLN137 4.3 44.9 1.0 CA A:GLY13 4.5 34.5 1.0 O2A A:ATP1380 4.6 47.5 1.0 OD2 A:ASP154 4.7 51.2 1.0 NE2 A:GLN137 4.7 45.8 1.0 OD1 A:ASP154 4.8 51.4 1.0 O3G A:ATP1380 4.8 39.3 1.0 OD2 A:ASP11 4.8 47.4 1.0 PA A:ATP1380 4.9 34.6 1.0 OD1 A:ASP11 4.9 58.5 1.0

W.L.Lee, J.M.Grimes, R.C.Robinson. Yersinia Effector Yopo Uses Actin As Bait to Phosphorylate Proteins That Regulate Polymerization Nat.Struct.Mol.Biol. 2015.
ISSN: ESSN 1545-9985
DOI: 10.1038/NSMB.2964