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Calcium in PDB 4cvb: Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase From Pseudogluconobacter Saccharoketogenenes

Enzymatic activity of Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase From Pseudogluconobacter Saccharoketogenenes

All present enzymatic activity of Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase From Pseudogluconobacter Saccharoketogenenes:
1.1.2.8;

Protein crystallography data

The structure of Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase From Pseudogluconobacter Saccharoketogenenes, PDB code: 4cvb was solved by H.J.Rozeboom, S.Yu, R.Mikkelsen, I.Nikolaev, H.Mulder, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.95 / 1.72
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 127.950, 87.190, 57.100, 90.00, 90.16, 90.00
R / Rfree (%) 12.77 / 14.858

Other elements in 4cvb:

The structure of Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase From Pseudogluconobacter Saccharoketogenenes also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase From Pseudogluconobacter Saccharoketogenenes (pdb code 4cvb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase From Pseudogluconobacter Saccharoketogenenes, PDB code: 4cvb:

Calcium binding site 1 out of 1 in 4cvb

Go back to Calcium Binding Sites List in 4cvb
Calcium binding site 1 out of 1 in the Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase From Pseudogluconobacter Saccharoketogenenes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase From Pseudogluconobacter Saccharoketogenenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1607

b:14.3
occ:1.00
 N6 A:PQQ1608 2.3 16.8 1.0
O5 A:PQQ1608 2.3 17.3 1.0
OE1 A:GLN220 2.4 16.9 1.0
OE2 A:GLU335 2.4 14.1 1.0
O7B A:PQQ1608 2.5 16.7 1.0
C5 A:PQQ1608 3.0 17.4 1.0
C6A A:PQQ1608 3.0 16.8 1.0
OH A:TYR476 3.1 16.1 1.0
OD1 A:ASP333 3.1 11.1 1.0
C7 A:PQQ1608 3.2 16.6 1.0
C7X A:PQQ1608 3.2 17.2 1.0
CD A:GLU335 3.3 12.1 1.0
CD A:GLN220 3.5 14.9 1.0
CG A:GLU335 3.7 10.8 1.0
NE1 A:TRP270 3.9 10.6 1.0
CG A:ASP333 4.0 10.7 1.0
CZ A:TYR476 4.0 15.7 1.0
CE2 A:TYR476 4.0 15.7 1.0
NE2 A:GLN220 4.0 15.9 1.0
OD2 A:ASP333 4.0 11.1 1.0
O A:HOH2363 4.2 13.0 1.0
OE1 A:GLU335 4.3 12.5 1.0
O A:HOH2423 4.3 42.7 1.0
NZ A:LYS378 4.4 8.0 1.0
CE2 A:TRP270 4.4 10.5 1.0
C9A A:PQQ1608 4.4 16.8 1.0
C4 A:PQQ1608 4.4 17.7 1.0
CZ2 A:TRP270 4.4 10.5 1.0
C8 A:PQQ1608 4.5 16.4 1.0
O7A A:PQQ1608 4.5 16.7 1.0
O A:HOH2377 4.5 15.6 1.0
CG A:GLN220 4.7 14.0 1.0
CD1 A:TRP270 4.8 10.3 1.0
C9 A:PQQ1608 5.0 16.3 1.0

Reference:

H.J.Rozeboom, S.Yu, R.Mikkelsen, I.Nikolaev, H.Mulder, B.W.Dijkstra. Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase From Pseudogluconobacter Saccharoketogenenes To Be Published.
Page generated: Tue Jul 8 19:20:09 2025

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