Atomistry » Calcium » PDB 4dtm-4ec5 » 4dz2
Atomistry »
  Calcium »
    PDB 4dtm-4ec5 »
      4dz2 »

Calcium in PDB 4dz2: Crystal Structure of A Peptidyl-Prolyl Cis-Trans Isomerase with Surface Mutation R92G From Burkholderia Pseudomallei Complexed with FK506

Enzymatic activity of Crystal Structure of A Peptidyl-Prolyl Cis-Trans Isomerase with Surface Mutation R92G From Burkholderia Pseudomallei Complexed with FK506

All present enzymatic activity of Crystal Structure of A Peptidyl-Prolyl Cis-Trans Isomerase with Surface Mutation R92G From Burkholderia Pseudomallei Complexed with FK506:
5.2.1.8;

Protein crystallography data

The structure of Crystal Structure of A Peptidyl-Prolyl Cis-Trans Isomerase with Surface Mutation R92G From Burkholderia Pseudomallei Complexed with FK506, PDB code: 4dz2 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.61 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 106.440, 49.050, 66.640, 90.00, 123.05, 90.00
R / Rfree (%) 21.9 / 24.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Peptidyl-Prolyl Cis-Trans Isomerase with Surface Mutation R92G From Burkholderia Pseudomallei Complexed with FK506 (pdb code 4dz2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Peptidyl-Prolyl Cis-Trans Isomerase with Surface Mutation R92G From Burkholderia Pseudomallei Complexed with FK506, PDB code: 4dz2:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4dz2

Go back to Calcium Binding Sites List in 4dz2
Calcium binding site 1 out of 2 in the Crystal Structure of A Peptidyl-Prolyl Cis-Trans Isomerase with Surface Mutation R92G From Burkholderia Pseudomallei Complexed with FK506


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Peptidyl-Prolyl Cis-Trans Isomerase with Surface Mutation R92G From Burkholderia Pseudomallei Complexed with FK506 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:14.4
occ:1.00
 O A:HOH370 2.3 19.8 1.0
O A:HOH369 2.3 15.0 1.0
OXT A:VAL113 2.4 16.1 1.0
OD2 A:ASP112 2.6 15.7 1.0
OD1 A:ASP112 2.6 16.2 1.0
CG A:ASP112 2.9 15.7 1.0
C A:VAL113 3.5 16.1 1.0
O A:VAL113 4.2 16.6 1.0
N A:VAL113 4.3 15.4 1.0
O A:HOH306 4.4 21.8 1.0
CB A:ASP112 4.4 15.6 1.0
O A:HOH387 4.5 25.3 1.0
CA A:VAL113 4.6 15.3 1.0
O A:HOH330 4.6 25.9 1.0
O A:HOH348 4.8 30.7 1.0
O A:HOH349 4.8 22.9 1.0

Calcium binding site 2 out of 2 in 4dz2

Go back to Calcium Binding Sites List in 4dz2
Calcium binding site 2 out of 2 in the Crystal Structure of A Peptidyl-Prolyl Cis-Trans Isomerase with Surface Mutation R92G From Burkholderia Pseudomallei Complexed with FK506


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Peptidyl-Prolyl Cis-Trans Isomerase with Surface Mutation R92G From Burkholderia Pseudomallei Complexed with FK506 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca201

b:13.5
occ:1.00
 O B:HOH365 2.2 21.7 1.0
O B:HOH364 2.2 12.8 1.0
O B:VAL113 2.4 17.4 1.0
OD2 B:ASP112 2.6 17.6 1.0
OD1 B:ASP112 2.6 17.9 1.0
CG B:ASP112 2.9 17.5 1.0
C B:VAL113 3.6 17.1 1.0
OXT B:VAL113 4.2 17.1 1.0
O B:HOH329 4.3 27.4 1.0
N B:VAL113 4.3 16.9 1.0
CB B:ASP112 4.4 17.2 1.0
CA B:VAL113 4.6 16.6 1.0
O B:HOH336 4.8 24.2 1.0
C B:ASP112 5.0 16.3 1.0

Reference:

D.W.Begley, D.Fox, D.Jenner, C.Juli, P.G.Pierce, J.Abendroth, M.Muruthi, K.Safford, V.Anderson, K.Atkins, S.R.Barnes, S.O.Moen, A.C.Raymond, R.Stacy, P.J.Myler, B.L.Staker, N.J.Harmer, I.H.Norville, U.Holzgrabe, M.Sarkar-Tyson, T.E.Edwards, D.D.Lorimer. A Structural Biology Approach Enables the Development of Antimicrobials Targeting Bacterial Immunophilins. Antimicrob.Agents Chemother. V. 58 1458 2014.
ISSN: ISSN 0066-4804
PubMed: 24366729
DOI: 10.1128/AAC.01875-13
Page generated: Tue Jul 8 19:38:44 2025

Last articles

Mg in 6YBW
Mg in 6YKW
Mg in 6YKV
Mg in 6YKU
Mg in 6YKT
Mg in 6YKS
Mg in 6YKQ
Mg in 6YKO
Mg in 6YKN
Mg in 6YKL
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy