Atomistry » Calcium » PDB 4ecg-4enz » 4elv
Atomistry »
  Calcium »
    PDB 4ecg-4enz »
      4elv »

Calcium in PDB 4elv: Snapshot of the Large Fragment of Dna Polymerase I From Thermus Aquaticus Processing Modified Pyrimidines

Enzymatic activity of Snapshot of the Large Fragment of Dna Polymerase I From Thermus Aquaticus Processing Modified Pyrimidines

All present enzymatic activity of Snapshot of the Large Fragment of Dna Polymerase I From Thermus Aquaticus Processing Modified Pyrimidines:
2.7.7.7;

Protein crystallography data

The structure of Snapshot of the Large Fragment of Dna Polymerase I From Thermus Aquaticus Processing Modified Pyrimidines, PDB code: 4elv was solved by A.Marx, K.Diederichs, S.Obeid, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.29 / 1.90
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 109.213, 109.213, 91.047, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 21.6

Other elements in 4elv:

The structure of Snapshot of the Large Fragment of Dna Polymerase I From Thermus Aquaticus Processing Modified Pyrimidines also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Snapshot of the Large Fragment of Dna Polymerase I From Thermus Aquaticus Processing Modified Pyrimidines (pdb code 4elv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Snapshot of the Large Fragment of Dna Polymerase I From Thermus Aquaticus Processing Modified Pyrimidines, PDB code: 4elv:

Calcium binding site 1 out of 1 in 4elv

Go back to Calcium Binding Sites List in 4elv
Calcium binding site 1 out of 1 in the Snapshot of the Large Fragment of Dna Polymerase I From Thermus Aquaticus Processing Modified Pyrimidines


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Snapshot of the Large Fragment of Dna Polymerase I From Thermus Aquaticus Processing Modified Pyrimidines within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca908

b:26.9
occ:1.00
 O7 A:0R7902 2.3 32.7 1.0
OD2 A:ASP785 2.3 36.0 1.0
O A:TYR611 2.3 25.3 1.0
O9 A:0R7902 2.3 27.8 1.0
OD1 A:ASP610 2.4 41.6 1.0
O11 A:0R7902 2.4 28.6 1.0
O A:HOH1196 3.3 44.3 1.0
CG A:ASP785 3.3 30.0 1.0
P2 A:0R7902 3.4 30.5 1.0
C A:TYR611 3.5 25.8 1.0
P3 A:0R7902 3.5 38.1 1.0
CG A:ASP610 3.5 36.0 1.0
P1 A:0R7902 3.7 29.9 1.0
O3 A:0R7902 3.8 23.5 1.0
OD1 A:ASP785 3.8 26.6 1.0
OD2 A:ASP610 4.0 31.6 1.0
O1 A:0R7902 4.0 35.7 1.0
O A:HOH1048 4.0 31.0 1.0
O A:HOH1080 4.0 37.3 1.0
MG A:MG901 4.1 42.4 1.0
C5' A:0R7902 4.3 30.3 1.0
N A:TYR611 4.3 23.9 1.0
N A:SER612 4.4 27.9 1.0
O6 A:0R7902 4.4 39.0 1.0
CA A:SER612 4.4 39.0 1.0
CA A:TYR611 4.4 24.2 1.0
O5' A:0R7902 4.5 24.9 1.0
N A:GLN613 4.5 39.0 1.0
CB A:ASP785 4.6 23.3 1.0
C A:ASP610 4.6 24.3 1.0
O5 A:0R7902 4.6 34.3 1.0
CG2 A:ILE614 4.7 31.1 1.0
O8 A:0R7902 4.7 29.4 1.0
CB A:ASP610 4.7 24.8 1.0
C A:SER612 4.7 35.1 1.0
CB A:TYR611 4.8 25.1 1.0
O10 A:0R7902 4.8 39.2 1.0
N A:ILE614 4.9 27.9 1.0
O A:ASP785 4.9 20.5 1.0

Reference:

S.Obeid, H.Bu Kamp, W.Welte, K.Diederichs, A.Marx. Snapshot of the Large Fragment of Dna Polymerase I From Thermus Aquaticus Processing Modified Pyrimidines To Be Published.
Page generated: Sun Jul 14 00:01:24 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy