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Calcium in PDB 4ewg: Crystal Structure of A Beta-Ketoacyl Synthase From Burkholderia Phymatum STM815

Protein crystallography data

The structure of Crystal Structure of A Beta-Ketoacyl Synthase From Burkholderia Phymatum STM815, PDB code: 4ewg was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.64 / 2.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 66.410, 60.940, 99.680, 90.00, 95.13, 90.00
R / Rfree (%) 19 / 23.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Beta-Ketoacyl Synthase From Burkholderia Phymatum STM815 (pdb code 4ewg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Beta-Ketoacyl Synthase From Burkholderia Phymatum STM815, PDB code: 4ewg:

Calcium binding site 1 out of 1 in 4ewg

Go back to Calcium Binding Sites List in 4ewg
Calcium binding site 1 out of 1 in the Crystal Structure of A Beta-Ketoacyl Synthase From Burkholderia Phymatum STM815


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Beta-Ketoacyl Synthase From Burkholderia Phymatum STM815 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca507

b:27.8
occ:1.00
NE2 B:HIS245 2.4 23.9 1.0
O B:HOH757 2.5 28.3 1.0
N3 B:IMD504 2.7 33.8 1.0
N3 B:IMD506 2.8 52.3 1.0
N3 B:IMD503 2.8 38.7 1.0
C2 B:IMD504 2.8 33.3 1.0
C2 B:IMD503 2.9 38.9 1.0
C2 B:IMD506 3.0 52.9 1.0
CD2 B:HIS245 3.0 24.7 1.0
N1 B:IMD505 3.1 43.6 1.0
C5 B:IMD505 3.1 41.7 1.0
CE1 B:HIS245 3.6 23.8 1.0
C2 B:IMD505 3.9 42.7 1.0
C4 B:IMD504 3.9 33.9 1.0
C4 B:IMD506 3.9 51.6 1.0
C4 B:IMD505 4.0 42.3 1.0
C4 B:IMD503 4.1 38.1 1.0
N1 B:IMD504 4.1 35.7 1.0
N1 B:IMD506 4.2 54.9 1.0
O B:HOH756 4.2 21.3 1.0
N1 B:IMD503 4.3 40.6 1.0
CG B:HIS245 4.3 24.0 1.0
N3 B:IMD505 4.4 43.8 1.0
ND1 B:HIS245 4.6 23.8 1.0
C5 B:IMD506 4.6 54.1 1.0
C5 B:IMD504 4.6 34.5 1.0
C5 B:IMD503 4.8 40.2 1.0

Reference:

L.Baugh, L.A.Gallagher, R.Patrapuvich, M.C.Clifton, A.S.Gardberg, T.E.Edwards, B.Armour, D.W.Begley, S.H.Dieterich, D.M.Dranow, J.Abendroth, J.W.Fairman, D.Fox, B.L.Staker, I.Phan, A.Gillespie, R.Choi, S.Nakazawa-Hewitt, M.T.Nguyen, A.Napuli, L.Barrett, G.W.Buchko, R.Stacy, P.J.Myler, L.J.Stewart, C.Manoil, W.C.Van Voorhis. Combining Functional and Structural Genomics to Sample the Essential Burkholderia Structome. Plos One V. 8 53851 2013.
ISSN: ESSN 1932-6203
PubMed: 23382856
DOI: 10.1371/JOURNAL.PONE.0053851
Page generated: Tue Jul 8 19:53:01 2025

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