Calcium in PDB 4fzm: Crystal Structure of the Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000

The structure of Crystal Structure of the Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000, PDB code: 4fzm was solved by A.W.Roszak, R.Grinter, J.R.Cogdell, D.Walker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.34 / 2.83
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	159.687, 159.687, 100.173, 90.00, 90.00, 120.00
R / Rfree (%)	20 / 23.9

The binding sites of Calcium atom in the Crystal Structure of the Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 (pdb code 4fzm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000, PDB code: 4fzm:

Calcium binding site 1 out of 1 in the Crystal Structure of the Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:79.6 occ:1.00 O A:LEU202 2.3 63.6 1.0 O1 A:EDO302 2.4 88.8 1.0 OD2 A:ASP232 2.4 80.9 1.0 O A:ASN204 2.5 83.2 1.0 O2 A:EDO302 2.5 81.5 1.0 OD1 A:ASP232 2.6 80.0 1.0 O A:HOH423 2.8 89.4 1.0 CG A:ASP232 2.9 78.0 1.0 C1 A:EDO302 3.3 85.8 1.0 C2 A:EDO302 3.3 84.6 1.0 N A:ASN204 3.5 68.9 1.0 C A:LEU202 3.5 60.7 1.0 C A:ASN204 3.6 74.3 1.0 C A:GLY203 4.1 65.9 1.0 CA A:ASN204 4.1 72.0 1.0 CA A:GLY203 4.2 62.2 1.0 N A:GLY203 4.3 59.2 1.0 CB A:ASP232 4.4 77.3 1.0 CA A:LEU202 4.6 58.8 1.0 N A:ILE205 4.7 70.2 1.0 CG2 A:ILE205 4.8 66.1 1.0 CB A:ASN204 4.9 75.4 1.0 CA A:ILE205 4.9 71.8 1.0

R.Grinter, A.W.Roszak, R.J.Cogdell, J.J.Milner, D.Walker. The Crystal Structure of the Lipid II-Degrading Bacteriocin Syringacin M Suggests Unexpected Evolutionary Relationships Between Colicin M-Like Bacteriocins. J.Biol.Chem. V. 287 38876 2012.
ISSN: ISSN 0021-9258
PubMed: 22995910
DOI: 10.1074/JBC.M112.400150