Calcium in PDB 4gfb: RAP1/Dna Complex

The structure of RAP1/Dna Complex, PDB code: 4gfb was solved by Y.-V.Le Bihan, B.Matot, M.-H.Le Du, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.27 / 2.99
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	63.830, 122.650, 149.450, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 26.9

The binding sites of Calcium atom in the RAP1/Dna Complex (pdb code 4gfb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the RAP1/Dna Complex, PDB code: 4gfb:

Calcium binding site 1 out of 1 in the RAP1/Dna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of RAP1/Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca701 b:63.0 occ:1.00 O A:HOH811 3.3 46.0 1.0 OE1 A:GLU390 3.9 50.0 1.0 CB A:GLU390 4.2 26.8 1.0 CG1 A:VAL374 4.2 28.4 1.0 CE1 A:TYR394 4.4 28.6 1.0 C A:GLU390 4.8 31.2 1.0 OH A:TYR394 4.8 33.0 1.0 O A:GLU390 4.9 32.7 1.0 CD A:GLU390 4.9 59.6 1.0 N A:ILE391 4.9 25.3 1.0

Y.V.Le Bihan, B.Matot, O.Pietrement, M.J.Giraud-Panis, S.Gasparini, E.Le Cam, E.Gilson, B.Sclavi, S.Miron, M.H.Le Du. Effect of RAP1 Binding on Dna Distortion and Potassium Permanganate Hypersensitivity. Acta Crystallogr.,Sect.D V. 69 409 2013.
ISSN: ISSN 0907-4449
PubMed: 23519416
DOI: 10.1107/S0907444912049311