Calcium in PDB 4grc: Crystal Structure of Dyp-Type Peroxidase (SCO2276) From Streptomyces Coelicolor

Enzymatic activity of Crystal Structure of Dyp-Type Peroxidase (SCO2276) From Streptomyces Coelicolor

All present enzymatic activity of Crystal Structure of Dyp-Type Peroxidase (SCO2276) From Streptomyces Coelicolor:
1.11.1.19;

Protein crystallography data

The structure of Crystal Structure of Dyp-Type Peroxidase (SCO2276) From Streptomyces Coelicolor, PDB code: 4grc was solved by T.Lukk, A.M.A.Hetta, A.Jones, J.Solbiati, S.Majumdar, J.E.Cronan, J.A.Gerlt, S.K.Nair, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	29.28 / 2.00
*Space group*	P 3₂ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	71.990, 71.990, 170.810, 90.00, 90.00, 120.00
*R / R_free (%)*	15.9 / 19.8

Other elements in 4grc:

The structure of Crystal Structure of Dyp-Type Peroxidase (SCO2276) From Streptomyces Coelicolor also contains other interesting chemical elements:

Iron

(Fe)

1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Dyp-Type Peroxidase (SCO2276) From Streptomyces Coelicolor (pdb code 4grc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Dyp-Type Peroxidase (SCO2276) From Streptomyces Coelicolor, PDB code: 4grc:

Calcium binding site 1 out of 1 in 4grc

Go back to

Calcium Binding Sites List in 4grc

Calcium binding site 1 out of 1 in the Crystal Structure of Dyp-Type Peroxidase (SCO2276) From Streptomyces Coelicolor

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Dyp-Type Peroxidase (SCO2276) From Streptomyces Coelicolor within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ca501 b:36.0 occ:1.00	O	A:HOH616	2.4	29.6	1.0
	O	A:HOH661	2.4	30.1	1.0
	O	A:HOH813	2.4	31.5	1.0
	O	A:HOH759	2.5	29.1	1.0
	O	A:HOH697	2.5	27.6	1.0
	O	A:HOH837	2.6	39.9	1.0
	O	A:HOH680	2.6	34.6	1.0
	O	A:HOH828	4.1	29.5	1.0
	O	A:HOH809	4.3	28.5	1.0
	OD2	A:ASP324	4.4	26.6	1.0
	O	A:HOH749	4.5	30.2	1.0
	OD1	A:ASP324	4.6	24.5	1.0
	O	A:HOH705	4.6	21.8	1.0
	O	A:HOH729	4.8	27.9	1.0
	O	A:HOH678	4.9	26.8	1.0
	CG	A:ASP324	5.0	22.3	1.0

Reference:

T.Lukk, A.M.A.Hetta, A.Jones, J.Solbiati, S.Majumdar, J.E.Cronan, J.A.Gerlt, S.K.Nair. Dyp-Type Peroxidases From Stretptomyces and Thermobifida Can Modify Organosolv Lignin. To Be Published.

Page generated: Tue Jul 8 22:24:21 2025

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