Atomistry » Calcium » PDB 4gq7-4gzs » 4gx1
Atomistry »
  Calcium »
    PDB 4gq7-4gzs »
      4gx1 »

Calcium in PDB 4gx1: Crystal Structure of the Gsuk Bound to Adp

Protein crystallography data

The structure of Crystal Structure of the Gsuk Bound to Adp, PDB code: 4gx1 was solved by C.Kong, W.Zeng, S.Ye, L.Chen, D.B.Sauer, Y.Lam, M.G.Derebe, Y.Jiang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.47 / 2.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 234.323, 111.442, 164.743, 90.00, 134.93, 90.00
R / Rfree (%) 21.2 / 25.5

Other elements in 4gx1:

The structure of Crystal Structure of the Gsuk Bound to Adp also contains other interesting chemical elements:

Potassium (K) 11 atoms
Zinc (Zn) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Gsuk Bound to Adp (pdb code 4gx1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of the Gsuk Bound to Adp, PDB code: 4gx1:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 4gx1

Go back to Calcium Binding Sites List in 4gx1
Calcium binding site 1 out of 4 in the Crystal Structure of the Gsuk Bound to Adp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Gsuk Bound to Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca605

b:65.8
occ:1.00
O B:THR183 2.9 71.2 1.0
OE1 A:GLN453 3.0 68.0 1.0
O A:GLU449 3.0 75.2 1.0
OD1 A:ASN450 3.0 59.5 1.0
OD1 B:ASN210 3.1 61.3 1.0
OG1 B:THR214 3.1 57.8 1.0
CD A:GLN453 3.5 66.9 1.0
CA A:ASN450 3.7 63.3 1.0
C A:GLU449 3.8 72.9 1.0
CG A:ASN450 3.8 59.9 1.0
CG A:GLN453 3.9 62.6 1.0
CG2 B:THR214 4.0 59.8 1.0
O A:HOH742 4.0 57.2 1.0
CG B:ASN210 4.1 60.5 1.0
C B:THR183 4.1 72.9 1.0
N A:ASN450 4.1 66.7 1.0
CB B:THR214 4.2 59.8 1.0
CB A:ASN450 4.2 59.5 1.0
CB B:THR183 4.3 73.3 1.0
NE2 A:GLN453 4.3 67.9 1.0
ND2 B:ASN210 4.4 60.7 1.0
CB A:GLN453 4.4 58.6 1.0
OG1 B:THR183 4.7 76.0 1.0
CA B:THR183 4.7 71.2 1.0
O B:ASN210 4.7 61.3 1.0
C A:ASN450 4.7 62.8 1.0
ND2 A:ASN450 4.8 61.2 1.0
CB A:GLU449 4.9 78.9 1.0
CA A:GLU449 4.9 75.2 1.0
CD1 A:ILE426 5.0 45.0 1.0
O A:ASN450 5.0 64.9 1.0

Calcium binding site 2 out of 4 in 4gx1

Go back to Calcium Binding Sites List in 4gx1
Calcium binding site 2 out of 4 in the Crystal Structure of the Gsuk Bound to Adp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Gsuk Bound to Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca605

b:64.3
occ:1.00
O B:GLU449 2.9 53.4 1.0
ND2 B:ASN450 3.1 59.9 1.0
OE1 B:GLN453 3.1 66.9 1.0
CD B:GLN453 3.5 66.5 1.0
CG B:GLN453 3.7 62.9 1.0
CA B:ASN450 3.8 57.2 1.0
C B:GLU449 3.9 58.7 1.0
CG B:ASN450 3.9 59.8 1.0
N B:ASN450 4.3 57.7 1.0
CB B:GLN453 4.3 57.5 1.0
CB B:ASN450 4.3 56.3 1.0
NE2 B:GLN453 4.4 67.7 1.0
OD1 B:ASN450 4.8 64.4 1.0
C B:ASN450 4.8 58.1 1.0
CD1 B:ILE426 4.9 49.0 1.0

Calcium binding site 3 out of 4 in 4gx1

Go back to Calcium Binding Sites List in 4gx1
Calcium binding site 3 out of 4 in the Crystal Structure of the Gsuk Bound to Adp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the Gsuk Bound to Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca605

b:63.0
occ:1.00
OD1 C:ASN210 2.9 54.8 1.0
O C:THR183 3.0 72.1 1.0
OG1 C:THR214 3.1 55.3 1.0
CG C:ASN210 3.8 55.1 1.0
ND2 C:ASN210 3.9 55.8 1.0
C C:THR183 4.0 70.8 1.0
CB C:THR183 4.1 75.5 1.0
CB C:THR214 4.2 57.7 1.0
CG2 C:THR214 4.3 54.4 1.0
CA C:THR183 4.6 71.7 1.0
OG1 C:THR183 4.7 76.8 1.0
O C:ASN210 4.8 53.3 1.0

Calcium binding site 4 out of 4 in 4gx1

Go back to Calcium Binding Sites List in 4gx1
Calcium binding site 4 out of 4 in the Crystal Structure of the Gsuk Bound to Adp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the Gsuk Bound to Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca606

b:68.5
occ:1.00
OD1 D:ASN210 2.9 52.4 1.0
O C:GLU449 3.0 69.0 1.0
OG1 D:THR214 3.0 53.7 1.0
O D:THR183 3.0 77.2 1.0
OE1 C:GLN453 3.2 75.1 1.0
OD1 C:ASN450 3.2 56.8 1.0
CD C:GLN453 3.5 75.6 1.0
CG C:GLN453 3.7 72.3 1.0
C D:THR183 3.8 74.2 1.0
CG D:ASN210 3.8 52.0 1.0
CG2 D:THR214 3.9 47.1 1.0
C C:GLU449 4.0 68.7 1.0
CA C:ASN450 4.0 62.9 1.0
CB D:THR214 4.0 51.5 1.0
CG C:ASN450 4.1 59.3 1.0
ND2 D:ASN210 4.1 50.2 1.0
CB D:THR183 4.1 69.6 1.0
NE2 C:GLN453 4.3 76.8 1.0
CA D:THR183 4.4 69.7 1.0
N C:ASN450 4.4 65.5 1.0
CB C:GLN453 4.4 66.0 1.0
CB C:ASN450 4.5 60.8 1.0
N D:ASP184 4.6 75.3 1.0
O D:ASN210 4.7 57.5 1.0
OG1 D:THR183 4.7 69.8 1.0
CA D:ASP184 4.8 76.3 1.0

Reference:

C.Kong, W.Zeng, S.Ye, L.Chen, D.B.Sauer, Y.Lam, M.G.Derebe, Y.Jiang. Distinct Gating Mechanisms Revealed By the Structures of A Multi-Ligand Gated K(+) Channel. Elife V. 1 00184 2012.
PubMed: 23240087
DOI: 10.7554/ELIFE.00184
Page generated: Sun Jul 14 07:27:05 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy