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Calcium in PDB 4h77: Crystal Structure of Haloalkane Dehalogenase Linb From Sphingobium Sp. MI1205

Enzymatic activity of Crystal Structure of Haloalkane Dehalogenase Linb From Sphingobium Sp. MI1205

All present enzymatic activity of Crystal Structure of Haloalkane Dehalogenase Linb From Sphingobium Sp. MI1205:
3.8.1.5;

Protein crystallography data

The structure of Crystal Structure of Haloalkane Dehalogenase Linb From Sphingobium Sp. MI1205, PDB code: 4h77 was solved by M.Okai, J.Ohtsuka, F.L.Imai, T.Mase, R.Moriuchi, M.Tsuda, K.Nagata, Y.Nagata, M.Tanokura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.60
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 50.404, 72.146, 73.492, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 19.1

Other elements in 4h77:

The structure of Crystal Structure of Haloalkane Dehalogenase Linb From Sphingobium Sp. MI1205 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Haloalkane Dehalogenase Linb From Sphingobium Sp. MI1205 (pdb code 4h77). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Haloalkane Dehalogenase Linb From Sphingobium Sp. MI1205, PDB code: 4h77:

Calcium binding site 1 out of 1 in 4h77

Go back to Calcium Binding Sites List in 4h77
Calcium binding site 1 out of 1 in the Crystal Structure of Haloalkane Dehalogenase Linb From Sphingobium Sp. MI1205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Haloalkane Dehalogenase Linb From Sphingobium Sp. MI1205 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca404

b:5.4
occ:1.00
 O A:ILE178 2.3 3.8 1.0
O A:PRO175 2.4 4.0 1.0
O A:HOH547 2.5 8.5 1.0
C A:PRO175 3.5 3.6 1.0
C A:ILE178 3.6 3.4 1.0
N A:ILE178 4.2 3.0 1.0
N A:GLY176 4.3 3.1 1.0
CA A:ILE178 4.4 2.7 1.0
CA A:GLY176 4.4 3.5 1.0
CA A:PRO175 4.4 3.9 1.0
C A:GLY176 4.4 3.5 1.0
O A:HOH541 4.4 7.8 1.0
O A:ARG180 4.5 5.3 1.0
CB A:ILE178 4.5 2.4 1.0
N A:LEU179 4.5 3.0 1.0
C A:LEU179 4.6 4.8 1.0
O A:LEU179 4.6 6.1 1.0
O A:GLY176 4.6 4.4 1.0
CA A:LEU179 4.6 4.0 1.0
CB A:PRO175 4.7 4.7 1.0
N A:LEU177 4.9 2.9 1.0

Reference:

M.Okai, J.Ohtsuka, L.F.Imai, T.Mase, R.Moriuchi, M.Tsuda, K.Nagata, Y.Nagata, M.Tanokura. Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase Linb From Sphingobium Sp. Strain MI1205. J.Bacteriol. V. 195 2642 2013.
ISSN: ISSN 0021-9193
PubMed: 23564170
DOI: 10.1128/JB.02020-12
Page generated: Tue Jul 8 22:35:50 2025

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