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Calcium in PDB 4jgl: Crystal Structure of A Streptavidin-Like Protein (BACEGG_01519) From Bacteroides Eggerthii Dsm 20697 at 1.25 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Streptavidin-Like Protein (BACEGG_01519) From Bacteroides Eggerthii Dsm 20697 at 1.25 A Resolution, PDB code: 4jgl was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.33 / 1.25
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 79.322, 79.322, 50.113, 90.00, 90.00, 120.00
R / Rfree (%) 13.4 / 15.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Streptavidin-Like Protein (BACEGG_01519) From Bacteroides Eggerthii Dsm 20697 at 1.25 A Resolution (pdb code 4jgl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Streptavidin-Like Protein (BACEGG_01519) From Bacteroides Eggerthii Dsm 20697 at 1.25 A Resolution, PDB code: 4jgl:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4jgl

Go back to Calcium Binding Sites List in 4jgl
Calcium binding site 1 out of 2 in the Crystal Structure of A Streptavidin-Like Protein (BACEGG_01519) From Bacteroides Eggerthii Dsm 20697 at 1.25 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Streptavidin-Like Protein (BACEGG_01519) From Bacteroides Eggerthii Dsm 20697 at 1.25 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:17.1
occ:0.75
O A:HOH484 2.3 33.0 1.0
OE2 A:GLU143 2.4 14.5 0.5
O A:HOH485 2.4 26.7 1.0
O A:HOH351 2.4 19.0 1.0
CD A:GLU143 3.3 17.4 0.5
OE1 A:GLU143 3.5 20.2 0.5
OE1 A:GLU143 3.9 19.1 0.5
O A:HOH467 4.5 35.9 1.0
CG A:GLU143 4.7 18.4 0.5

Calcium binding site 2 out of 2 in 4jgl

Go back to Calcium Binding Sites List in 4jgl
Calcium binding site 2 out of 2 in the Crystal Structure of A Streptavidin-Like Protein (BACEGG_01519) From Bacteroides Eggerthii Dsm 20697 at 1.25 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Streptavidin-Like Protein (BACEGG_01519) From Bacteroides Eggerthii Dsm 20697 at 1.25 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:11.6
occ:1.00
O A:CYS142 2.3 13.5 1.0
O A:SER145 2.3 10.3 1.0
O A:THR139 2.4 12.6 1.0
O A:HOH309 2.4 14.1 1.0
O A:HOH319 2.4 16.0 1.0
O A:HOH301 2.4 14.1 1.0
OG1 A:THR139 2.5 10.5 1.0
C A:THR139 3.3 13.7 1.0
C A:CYS142 3.4 12.8 1.0
C A:SER145 3.5 10.1 1.0
CB A:THR139 3.6 11.4 1.0
CA A:THR139 3.8 12.6 1.0
N A:THR139 4.1 11.7 1.0
OG A:SER145 4.2 12.5 1.0
CA A:ALA146 4.3 9.5 1.0
N A:CYS142 4.3 15.5 1.0
CA A:CYS142 4.3 14.2 1.0
N A:ALA146 4.3 9.8 1.0
N A:GLU143 4.4 12.7 1.0
O A:HOH393 4.4 25.9 1.0
O A:ALA146 4.4 11.2 1.0
N A:PRO140 4.4 15.0 1.0
CA A:GLU143 4.4 13.0 0.5
CA A:GLU143 4.4 12.7 0.5
N A:SER145 4.5 10.2 1.0
C A:ALA146 4.6 9.6 1.0
CA A:SER145 4.6 10.4 1.0
CB A:CYS142 4.6 15.6 1.0
CA A:PRO140 4.7 15.7 1.0
O A:HOH486 4.7 14.4 1.0
C A:GLU143 4.8 13.2 1.0
C A:PRO140 4.8 17.3 1.0
CG2 A:THR139 4.9 11.2 1.0
O A:HOH347 5.0 23.7 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Jul 8 23:09:18 2025

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