Calcium in PDB 4jwp: Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa

The structure of Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa, PDB code: 4jwp was solved by Ssgcid, Seattle Structural Genomics Center For Infectious Disease(Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.58 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	72.420, 74.380, 67.550, 90.00, 91.62, 90.00
R / Rfree (%)	17.3 / 22.5

The structure of Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Calcium atom in the Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa (pdb code 4jwp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa, PDB code: 4jwp:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:18.5 occ:1.00 O A:HOH426 2.2 22.9 1.0 OD2 A:ASP37 2.2 19.5 1.0 O A:HOH310 2.3 16.9 1.0 O A:HOH444 2.4 36.2 1.0 CG A:ASP37 3.3 19.1 1.0 OD1 A:ASP37 3.6 18.4 1.0 O A:HOH451 4.3 36.7 1.0 CB A:ASP37 4.6 19.2 1.0 O A:HOH302 4.6 12.7 1.0 CG A:GLU39 4.7 31.6 1.0 CB A:GLU39 4.9 28.6 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:23.6 occ:1.00 O A:HOH325 2.2 29.9 1.0 O A:HOH335 2.3 19.5 1.0 OE2 A:GLU112 2.3 20.3 1.0 O A:HOH369 2.4 23.3 1.0 OE1 A:GLU112 2.5 20.2 1.0 CD A:GLU112 2.7 20.0 1.0 OE2 A:GLU109 3.1 24.5 1.0 CD A:GLU109 4.1 21.1 1.0 O A:HOH438 4.2 33.7 1.0 CG A:GLU112 4.2 19.1 1.0 OE2 A:GLU105 4.3 19.0 1.0 O A:HOH327 4.3 34.8 1.0 O A:HOH336 4.7 36.2 1.0 OE1 A:GLU109 4.8 21.7 1.0 CG A:GLU109 4.9 19.7 1.0 O A:HOH439 4.9 40.3 1.0 O A:HOH381 4.9 32.9 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:29.2 occ:1.00 OE2 B:GLU25 2.3 28.4 1.0 O B:HOH334 2.6 28.1 1.0 O B:HOH384 2.8 27.6 1.0 CD B:GLU25 2.9 27.2 1.0 OE1 B:GLU25 2.9 29.1 1.0 CG B:GLU25 4.3 26.8 1.0 O B:HOH376 4.7 26.1 1.0 O B:HOH316 4.7 18.1 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca202 b:34.3 occ:1.00 O B:GLY121 2.2 15.2 1.0 O B:HOH398 2.3 29.6 1.0 O B:HOH433 2.3 36.1 1.0 O B:HOH432 2.3 35.1 1.0 O B:HOH308 2.6 17.0 1.0 O B:HOH435 3.2 34.1 1.0 C B:GLY121 3.4 14.7 1.0 CA B:GLY121 4.1 14.8 1.0 N B:GLY121 4.1 15.3 1.0 O B:HOH434 4.3 34.2 1.0 OE2 B:GLU84 4.3 19.8 1.0 O B:HOH360 4.4 31.1 1.0 O B:ALA29 4.5 19.5 1.0 N B:ILE122 4.5 14.2 1.0 O B:LEU85 4.6 16.1 1.0 OG B:SER86 4.6 17.5 1.0 CA B:ILE122 4.7 14.8 1.0 O B:HOH309 4.7 23.2 1.0 O B:HOH352 4.8 24.7 1.0 O B:HOH420 4.9 40.5 1.0 O B:HOH312 5.0 13.6 1.0

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), J.Abendroth, T.Arakaki, D.Lorimer, T.E.Edwards. Crystal Structure of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis in Complex with Acetyl Coa To Be Published.