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Calcium in PDB 4kh9: Crystal Structure of A DUF4785 Family Protein (LPG0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 at 2.00 A Resolution

Protein crystallography data

The structure of Crystal Structure of A DUF4785 Family Protein (LPG0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 at 2.00 A Resolution, PDB code: 4kh9 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.54 / 2.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 53.807, 62.975, 70.632, 64.13, 82.94, 67.17
R / Rfree (%) 19.4 / 22.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A DUF4785 Family Protein (LPG0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 at 2.00 A Resolution (pdb code 4kh9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of A DUF4785 Family Protein (LPG0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 at 2.00 A Resolution, PDB code: 4kh9:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 4kh9

Go back to Calcium Binding Sites List in 4kh9
Calcium binding site 1 out of 3 in the Crystal Structure of A DUF4785 Family Protein (LPG0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A DUF4785 Family Protein (LPG0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:90.0
occ:1.00
O A:HOH533 2.3 44.5 1.0
O B:HOH693 2.9 54.1 1.0
OD2 A:ASP214 2.9 49.9 1.0
OD1 A:ASP214 3.1 50.8 1.0
CG A:ASP214 3.4 48.5 1.0
O B:HOH640 3.5 43.0 1.0
O A:HOH505 3.6 50.1 1.0
O A:HOH551 3.8 48.1 1.0
OD2 A:ASP216 4.0 74.5 1.0
CB A:ASP214 5.0 39.5 1.0
CG A:ASP216 5.0 61.4 1.0

Calcium binding site 2 out of 3 in 4kh9

Go back to Calcium Binding Sites List in 4kh9
Calcium binding site 2 out of 3 in the Crystal Structure of A DUF4785 Family Protein (LPG0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A DUF4785 Family Protein (LPG0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:41.0
occ:1.00
O B:HOH698 2.2 36.2 1.0
O B:HOH720 2.4 39.1 1.0
O B:HOH697 2.5 41.2 1.0
O B:HOH620 2.5 37.6 1.0
OD1 B:ASP45 2.5 39.3 1.0
OD2 B:ASP45 2.6 47.6 1.0
CG B:ASP45 2.9 43.4 1.0
O B:HIS44 4.4 40.3 1.0
CB B:ASP45 4.4 39.8 1.0
O B:HOH699 4.5 38.8 1.0
CD2 B:LEU43 4.7 49.3 1.0
CB B:LEU43 4.7 39.7 1.0
O B:HOH624 4.9 37.3 1.0
C B:HIS44 5.0 43.3 1.0

Calcium binding site 3 out of 3 in 4kh9

Go back to Calcium Binding Sites List in 4kh9
Calcium binding site 3 out of 3 in the Crystal Structure of A DUF4785 Family Protein (LPG0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A DUF4785 Family Protein (LPG0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca502

b:55.8
occ:1.00
O B:HOH703 2.2 35.5 1.0
OD2 B:ASP214 2.6 40.4 1.0
O B:HOH702 2.7 61.0 1.0
OD1 B:ASP214 2.7 38.2 1.0
CG B:ASP214 3.0 39.1 1.0
O B:HOH631 3.0 40.9 1.0
O B:HOH704 3.2 60.4 1.0
OD2 B:ASP216 3.8 80.3 1.0
CB B:ASP214 4.5 32.6 1.0
O B:HOH662 4.6 51.7 1.0
O B:HOH640 4.7 43.0 1.0
CG B:ASP216 4.9 66.0 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Jul 8 23:30:00 2025

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