Atomistry » Calcium » PDB 4k9m-4ko1 » 4kkm
Atomistry »
  Calcium »
    PDB 4k9m-4ko1 »
      4kkm »

Calcium in PDB 4kkm: Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure

Enzymatic activity of Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure

All present enzymatic activity of Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure:
2.5.1.10;

Protein crystallography data

The structure of Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure, PDB code: 4kkm was solved by M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, C.D.Poulter, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative(Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.96 / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 73.414, 73.414, 229.419, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 20.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure (pdb code 4kkm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure, PDB code: 4kkm:

Calcium binding site 1 out of 1 in 4kkm

Go back to Calcium Binding Sites List in 4kkm
Calcium binding site 1 out of 1 in the Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca302

b:69.9
occ:1.00
 OD1 B:ASP92 2.4 0.4 1.0
OD1 B:ASP86 2.4 45.5 1.0
OD2 B:ASP92 2.5 0.0 1.0
CG B:ASP92 2.7 0.0 1.0
CG B:ASP86 3.2 43.1 1.0
OD2 B:ASP86 3.3 47.8 1.0
O B:HOH483 3.4 54.7 1.0
CB B:ASP92 4.2 99.5 1.0
OD2 B:ASP162 4.4 45.5 1.0
OE2 B:GLU166 4.5 54.7 1.0
OE1 B:GLU166 4.5 50.1 1.0
CB B:ASP86 4.7 28.6 1.0
O B:ASP86 4.8 47.1 1.0
OE1 B:GLN159 4.8 37.0 0.6
CE B:MET91 4.8 91.5 1.0
NE2 B:GLN159 4.9 43.4 0.6
N B:ASP92 4.9 99.7 1.0
CD B:GLU166 4.9 53.2 1.0

Reference:

M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, C.D.Poulter, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure To Be Published.
Page generated: Tue Jul 8 23:35:43 2025

Last articles

Mg in 4PKD
Mg in 4PJR
Mg in 4PK4
Mg in 4PJN
Mg in 4PJL
Mg in 4PJK
Mg in 4PJM
Mg in 4PJ0
Mg in 4PBU
Mg in 4PJ1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy