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Calcium in PDB 4kwu: 1.9 Angstrom Resolution Crystal Structure of Uncharacterized Protein LMO2446 From Listeria Monocytogenes Egd-E in Complex with Alpha-D- Glucose, Beta-D-Glucose, Magnesium and Calcium

Protein crystallography data

The structure of 1.9 Angstrom Resolution Crystal Structure of Uncharacterized Protein LMO2446 From Listeria Monocytogenes Egd-E in Complex with Alpha-D- Glucose, Beta-D-Glucose, Magnesium and Calcium, PDB code: 4kwu was solved by A.S.Halavaty, G.Minasov, I.Dubrovska, J.Winsor, L.Shuvalova, S.Peterson, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.92 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 166.125, 102.962, 75.006, 90.00, 104.93, 90.00
R / Rfree (%) 13.5 / 17.1

Other elements in 4kwu:

The structure of 1.9 Angstrom Resolution Crystal Structure of Uncharacterized Protein LMO2446 From Listeria Monocytogenes Egd-E in Complex with Alpha-D- Glucose, Beta-D-Glucose, Magnesium and Calcium also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the 1.9 Angstrom Resolution Crystal Structure of Uncharacterized Protein LMO2446 From Listeria Monocytogenes Egd-E in Complex with Alpha-D- Glucose, Beta-D-Glucose, Magnesium and Calcium (pdb code 4kwu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the 1.9 Angstrom Resolution Crystal Structure of Uncharacterized Protein LMO2446 From Listeria Monocytogenes Egd-E in Complex with Alpha-D- Glucose, Beta-D-Glucose, Magnesium and Calcium, PDB code: 4kwu:

Calcium binding site 1 out of 1 in 4kwu

Go back to Calcium Binding Sites List in 4kwu
Calcium binding site 1 out of 1 in the 1.9 Angstrom Resolution Crystal Structure of Uncharacterized Protein LMO2446 From Listeria Monocytogenes Egd-E in Complex with Alpha-D- Glucose, Beta-D-Glucose, Magnesium and Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of 1.9 Angstrom Resolution Crystal Structure of Uncharacterized Protein LMO2446 From Listeria Monocytogenes Egd-E in Complex with Alpha-D- Glucose, Beta-D-Glucose, Magnesium and Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1109

b:20.6
occ:1.00
OE1 A:GLU970 2.3 19.4 1.0
OD1 A:ASP1085 2.3 20.4 1.0
O A:GLY992 2.3 21.8 1.0
O A:THR989 2.4 22.5 1.0
OE1 A:GLU972 2.4 23.7 1.0
OE2 A:GLU972 2.5 23.1 1.0
O A:ASP1085 2.6 19.4 1.0
CD A:GLU972 2.8 23.0 1.0
CD A:GLU970 3.4 22.4 1.0
C A:THR989 3.5 22.1 1.0
C A:GLY992 3.5 22.4 1.0
CG A:ASP1085 3.5 22.8 1.0
C A:ASP1085 3.5 20.4 1.0
CA A:ASP1085 3.9 20.9 1.0
OG1 A:THR989 4.0 23.7 1.0
N A:THR989 4.1 23.0 1.0
N A:GLY992 4.2 24.0 1.0
OE2 A:GLU970 4.2 23.3 1.0
CB A:GLU970 4.3 20.9 1.0
N A:GLY990 4.3 22.3 1.0
CB A:ASP1085 4.3 21.1 1.0
CG A:GLU970 4.3 22.3 1.0
CA A:GLY990 4.3 22.2 1.0
N A:PHE993 4.3 22.7 1.0
CA A:THR989 4.4 22.4 1.0
CG A:GLU972 4.4 23.4 1.0
CA A:GLY992 4.4 23.1 1.0
CA A:PHE993 4.4 21.5 1.0
OD2 A:ASP1085 4.4 22.2 1.0
CB A:TYR988 4.4 23.8 1.0
CA A:GLU970 4.6 21.5 1.0
N A:HIS1086 4.6 20.8 1.0
N A:ALA971 4.6 21.1 1.0
CB A:HIS1086 4.7 20.9 1.0
C A:GLY990 4.7 22.4 1.0
N A:THR991 4.8 22.1 1.0
CB A:THR989 4.8 22.2 1.0
CB A:PHE993 4.9 21.0 1.0
CD1 A:TYR988 4.9 23.8 1.0
C A:TYR988 5.0 23.7 1.0

Reference:

A.S.Halavaty, G.Minasov, I.Dubrovska, J.Winsor, L.Shuvalova, S.Peterson, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.9 Angstrom Resolution Crystal Structure of Uncharacterized Protein LMO2446 From Listeria Monocytogenes Egd-E in Complex with Alpha-D-Glucose, Beta-D-Glucose, Magnesium and Calcium To Be Published.
Page generated: Tue Jul 8 23:41:35 2025

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