Calcium in PDB 4m7h: Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1

The structure of Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1, PDB code: 4m7h was solved by A.K.Shrive, T.J.Greenhough, U.Holmskov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.92 / 2.00
Space group	P 4
Cell size a, b, c (Å), α, β, γ (°)	118.560, 118.560, 44.250, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 20.9

The binding sites of Calcium atom in the Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 (pdb code 4m7h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1, PDB code: 4m7h:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:30.2 occ:1.00 OD2 A:ASP393 2.3 33.8 1.0 OD2 A:ASP395 2.4 31.6 1.0 O A:ASN399 2.4 36.4 1.0 O A:HOH610 2.4 29.6 1.0 OD1 A:ASP393 2.5 30.9 1.0 O A:HOH687 2.5 35.3 1.0 O A:SER397 2.6 39.5 1.0 CG A:ASP393 2.7 31.2 1.0 CG A:ASP395 3.2 31.7 1.0 C A:ASN399 3.4 37.9 1.0 OD1 A:ASP395 3.5 30.0 1.0 C A:SER397 3.6 39.8 1.0 N A:SER397 4.1 37.1 1.0 O A:ASP395 4.1 32.4 1.0 N A:ASN399 4.1 41.9 1.0 CB A:ASP393 4.1 29.9 1.0 CA A:SER397 4.2 38.7 1.0 O A:HOH740 4.2 47.8 1.0 N A:ASN400 4.2 33.6 1.0 CA A:ASN399 4.3 40.7 1.0 C A:GLU398 4.3 42.8 1.0 CA A:ASN400 4.3 31.9 1.0 CB A:SER397 4.3 38.6 1.0 C A:ASP395 4.4 33.3 1.0 N A:ASP395 4.5 31.5 1.0 O A:GLU398 4.5 42.9 1.0 CB A:ASP395 4.5 31.7 1.0 O A:HOH662 4.5 35.0 1.0 N A:GLU398 4.5 41.7 1.0 CA A:ASP395 4.7 32.4 1.0 CA A:GLU398 4.8 43.5 1.0 OG A:SER397 4.9 39.3 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca501 b:26.9 occ:1.00 OD2 B:ASP395 2.3 27.2 1.0 OD2 B:ASP393 2.3 26.4 1.0 O B:ASN399 2.3 29.1 1.0 O B:HOH607 2.4 22.1 1.0 OD1 B:ASP393 2.5 26.8 1.0 O B:HOH703 2.5 36.3 1.0 O B:SER397 2.6 36.0 1.0 CG B:ASP393 2.7 27.1 1.0 CG B:ASP395 3.2 28.4 1.0 C B:ASN399 3.4 30.4 1.0 OD1 B:ASP395 3.5 26.1 1.0 C B:SER397 3.5 36.6 1.0 N B:SER397 4.1 34.0 1.0 O B:ASP395 4.1 28.6 1.0 N B:ASN399 4.2 35.2 1.0 O B:HOH699 4.2 38.3 1.0 CA B:SER397 4.2 35.1 1.0 CB B:ASP393 4.2 26.5 1.0 N B:ASN400 4.3 28.0 1.0 CA B:ASN400 4.3 25.7 1.0 C B:GLU398 4.3 37.3 1.0 CA B:ASN399 4.4 34.0 1.0 CB B:SER397 4.4 36.1 1.0 C B:ASP395 4.5 29.0 1.0 CB B:ASP395 4.5 26.5 1.0 N B:GLU398 4.5 36.9 1.0 N B:ASP395 4.6 25.6 1.0 O B:GLU398 4.6 37.8 1.0 O B:HOH668 4.6 30.2 1.0 CA B:ASP395 4.8 27.6 1.0 CA B:GLU398 4.8 38.3 1.0 OG B:SER397 4.9 36.7 1.0

A.K.Shrive, J.B.Moeller, I.Burns, J.M.Paterson, A.J.Shaw, A.Schlosser, G.L.Sorensen, T.J.Greenhough, U.Holmskov. Crystal Structure of the Tetrameric Fibrinogen-Like Recognition Domain of Fibrinogen C Domain Containing 1 (FIBCD1) Protein. J.Biol.Chem. V. 289 2880 2014.
ISSN: ISSN 0021-9258
PubMed: 24293368
DOI: 10.1074/JBC.M113.520577