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Calcium in PDB 4mlw: Crystal Structure of Non-Myristoylated Recoverin at 1.45 A Resolution with Calcium Bound to Ef-Hand 3

Protein crystallography data

The structure of Crystal Structure of Non-Myristoylated Recoverin at 1.45 A Resolution with Calcium Bound to Ef-Hand 3, PDB code: 4mlw was solved by R.Prem Kumar, M.J.Ranaghan, D.D.Oprian, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.86 / 1.45
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 84.720, 84.720, 58.850, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Non-Myristoylated Recoverin at 1.45 A Resolution with Calcium Bound to Ef-Hand 3 (pdb code 4mlw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Non-Myristoylated Recoverin at 1.45 A Resolution with Calcium Bound to Ef-Hand 3, PDB code: 4mlw:

Calcium binding site 1 out of 1 in 4mlw

Go back to Calcium Binding Sites List in 4mlw
Calcium binding site 1 out of 1 in the Crystal Structure of Non-Myristoylated Recoverin at 1.45 A Resolution with Calcium Bound to Ef-Hand 3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Non-Myristoylated Recoverin at 1.45 A Resolution with Calcium Bound to Ef-Hand 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:20.9
occ:1.00
O A:THR116 2.3 23.6 1.0
OD1 A:ASP110 2.3 22.2 1.0
O A:HOH401 2.4 34.9 1.0
OD1 A:ASN114 2.4 26.1 1.0
OD1 A:ASP112 2.4 25.9 1.0
OE1 A:GLU121 2.5 21.5 1.0
OE2 A:GLU121 2.5 22.0 1.0
CD A:GLU121 2.9 22.5 1.0
CG A:ASP112 3.4 32.1 1.0
CG A:ASN114 3.4 30.5 1.0
C A:THR116 3.5 21.1 1.0
CG A:ASP110 3.5 21.8 1.0
OD2 A:ASP112 3.8 35.4 1.0
ND2 A:ASN114 3.9 30.4 1.0
N A:ASN114 4.2 20.1 1.0
N A:ASP112 4.2 20.6 1.0
CA A:ASP110 4.2 20.9 1.0
O A:HOH490 4.2 41.0 1.0
CA A:ILE117 4.3 17.0 1.0
N A:THR116 4.3 18.9 1.0
C A:ASP110 4.3 19.3 1.0
N A:ILE117 4.3 17.7 1.0
CG A:GLU121 4.4 17.5 1.0
OD2 A:ASP110 4.4 20.9 1.0
CB A:ASP110 4.4 18.2 1.0
N A:VAL111 4.4 19.2 1.0
CB A:ASN114 4.5 28.2 1.0
N A:GLY113 4.5 22.7 1.0
CA A:THR116 4.5 20.1 1.0
CB A:ASP112 4.5 22.2 1.0
N A:SER118 4.6 17.9 1.0
OG1 A:THR116 4.7 24.8 1.0
CA A:ASN114 4.7 25.4 1.0
CA A:ASP112 4.7 23.6 1.0
N A:GLY115 4.8 22.0 1.0
O A:ASP110 4.8 20.4 1.0
C A:ILE117 4.8 16.7 1.0
C A:ASP112 4.9 26.8 1.0
C A:ASN114 5.0 24.7 1.0

Reference:

M.J.Ranaghan, R.P.Kumar, K.S.Chakrabarti, V.Buosi, D.Kern, D.D.Oprian. A Highly Conserved Cysteine of Neuronal Calcium-Sensing Proteins Controls Cooperative Binding of CA2+ to Recoverin. J.Biol.Chem. V. 288 36160 2013.
ISSN: ISSN 0021-9258
PubMed: 24189072
DOI: 10.1074/JBC.M113.524355
Page generated: Wed Jul 9 00:26:01 2025

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