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Calcium in PDB 4mpj: Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation

Enzymatic activity of Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation

All present enzymatic activity of Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation:
4.1.1.7;

Protein crystallography data

The structure of Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation, PDB code: 4mpj was solved by F.H.Andrews, M.J.Mcleish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.74 / 1.50
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 81.254, 95.343, 137.114, 90.00, 90.00, 90.00
R / Rfree (%) 11.8 / 14.2

Other elements in 4mpj:

The structure of Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation (pdb code 4mpj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation, PDB code: 4mpj:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4mpj

Go back to Calcium Binding Sites List in 4mpj
Calcium binding site 1 out of 2 in the Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca601

b:9.0
occ:1.00
 O2A A:TPP604 2.3 7.4 1.0
O A:THR457 2.3 8.5 1.0
OD1 A:ASP428 2.3 8.8 1.0
OD1 A:ASN455 2.3 10.1 1.0
O3B A:TPP604 2.3 8.2 1.0
O A:HOH719 2.3 10.7 1.0
CG A:ASN455 3.2 11.3 1.0
CG A:ASP428 3.4 8.6 1.0
PA A:TPP604 3.4 7.4 1.0
C A:THR457 3.5 8.1 1.0
PB A:TPP604 3.5 7.2 1.0
O3A A:TPP604 3.6 6.7 1.0
ND2 A:ASN455 3.6 13.1 1.0
OD2 A:ASP428 4.0 10.7 1.0
N A:THR457 4.0 8.5 1.0
N A:ASP428 4.1 6.2 1.0
N A:GLY459 4.2 7.7 1.0
O7 A:TPP604 4.2 7.2 1.0
O A:MET453 4.3 9.2 1.0
N A:GLY429 4.3 7.0 1.0
CA A:THR457 4.3 8.9 1.0
O2B A:TPP604 4.3 7.5 1.0
N A:ASN455 4.4 8.8 1.0
N A:TYR458 4.4 7.6 1.0
O A:HOH730 4.5 8.9 1.0
CB A:ASN455 4.5 11.4 1.0
CA A:TYR458 4.6 7.8 1.0
N A:GLY456 4.6 9.0 1.0
O1B A:TPP604 4.6 7.8 1.0
O1A A:TPP604 4.6 7.4 1.0
CB A:ASP428 4.6 7.1 1.0
CA A:ASN455 4.7 9.4 1.0
CG2 A:THR457 4.8 9.8 1.0
CA A:GLY427 4.8 7.3 1.0
CA A:ASP428 4.8 6.8 1.0
C A:ASN455 4.8 9.5 1.0
C A:GLY427 4.8 6.4 1.0
C A:TYR458 4.9 7.8 1.0

Calcium binding site 2 out of 2 in 4mpj

Go back to Calcium Binding Sites List in 4mpj
Calcium binding site 2 out of 2 in the Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca603

b:16.4
occ:1.00
 OD1 A:ASP364 2.4 13.2 1.0
O A:HOH780 2.4 12.3 1.0
O A:HOH1145 2.4 31.0 1.0
O A:HOH936 2.5 23.4 1.0
O A:HOH1234 2.5 30.9 1.0
O A:HOH1090 2.7 29.1 1.0
O A:HOH1010 3.1 22.9 1.0
CG A:ASP364 3.5 13.2 1.0
OD2 A:ASP364 3.8 14.4 1.0
O A:ASP360 4.5 9.4 1.0
ND2 A:ASN363 4.7 11.2 1.0
CB A:ASP364 4.8 11.4 1.0
O A:HOH745 4.8 10.9 1.0
O A:HOH1202 4.9 35.1 1.0

Reference:

F.H.Andrews, M.J.Mcleish. Phosphorylation of An Active Site Threonine in the Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation To Be Published.
Page generated: Wed Jul 9 00:27:26 2025

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