Atomistry » Calcium » PDB 4n66-4nhf » 4ncz
Atomistry »
  Calcium »
    PDB 4n66-4nhf »
      4ncz »

Calcium in PDB 4ncz: Spermidine N-Acetyltransferase From Vibrio Cholerae in Complex with 2- [N-Cyclohexylamino]Ethane Sulfonate.

Protein crystallography data

The structure of Spermidine N-Acetyltransferase From Vibrio Cholerae in Complex with 2- [N-Cyclohexylamino]Ethane Sulfonate., PDB code: 4ncz was solved by J.Osipiuk, M.Zhou, M.Gu, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.02 / 1.89
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.751, 134.498, 137.086, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 23.8

Other elements in 4ncz:

The structure of Spermidine N-Acetyltransferase From Vibrio Cholerae in Complex with 2- [N-Cyclohexylamino]Ethane Sulfonate. also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Spermidine N-Acetyltransferase From Vibrio Cholerae in Complex with 2- [N-Cyclohexylamino]Ethane Sulfonate. (pdb code 4ncz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Spermidine N-Acetyltransferase From Vibrio Cholerae in Complex with 2- [N-Cyclohexylamino]Ethane Sulfonate., PDB code: 4ncz:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4ncz

Go back to Calcium Binding Sites List in 4ncz
Calcium binding site 1 out of 2 in the Spermidine N-Acetyltransferase From Vibrio Cholerae in Complex with 2- [N-Cyclohexylamino]Ethane Sulfonate.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Spermidine N-Acetyltransferase From Vibrio Cholerae in Complex with 2- [N-Cyclohexylamino]Ethane Sulfonate. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:36.9
occ:0.80
OE2 A:GLU75 2.4 44.5 1.0
OE2 C:GLU75 2.4 52.2 1.0
OE1 C:GLU33 2.5 53.1 1.0
OE2 C:GLU33 2.5 58.7 1.0
OE1 A:GLU33 2.5 51.4 1.0
OE1 A:GLU75 2.6 41.7 1.0
OE2 A:GLU33 2.6 54.3 1.0
OE1 C:GLU75 2.7 45.7 1.0
CD C:GLU33 2.8 53.1 1.0
CD A:GLU75 2.8 43.4 1.0
CD A:GLU33 2.8 48.5 1.0
CD C:GLU75 2.9 45.4 1.0
O A:HOH404 3.8 49.1 1.0
O A:HOH430 4.0 51.5 1.0
O A:HOH487 4.0 44.6 1.0
O C:HOH427 4.2 53.1 1.0
CG C:GLU33 4.2 43.9 1.0
CG A:GLU33 4.3 41.7 1.0
CG A:GLU75 4.3 39.3 1.0
O C:HOH424 4.4 49.9 1.0
O A:HOH424 4.5 51.0 1.0
CG C:GLU75 4.5 38.7 1.0
O A:HOH467 4.6 53.0 1.0
O A:HOH406 4.7 37.8 1.0
O C:HOH484 4.9 37.7 1.0

Calcium binding site 2 out of 2 in 4ncz

Go back to Calcium Binding Sites List in 4ncz
Calcium binding site 2 out of 2 in the Spermidine N-Acetyltransferase From Vibrio Cholerae in Complex with 2- [N-Cyclohexylamino]Ethane Sulfonate.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Spermidine N-Acetyltransferase From Vibrio Cholerae in Complex with 2- [N-Cyclohexylamino]Ethane Sulfonate. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca304

b:36.5
occ:0.40
OE2 B:GLU75 2.4 45.9 1.0
OE1 B:GLU33 2.5 47.9 1.0
OE2 B:GLU33 2.5 55.4 1.0
OE1 B:GLU75 2.7 46.0 1.0
CD B:GLU33 2.8 45.6 1.0
CD B:GLU75 2.9 41.8 1.0
O B:HOH418 3.7 56.5 1.0
O B:HOH429 4.0 47.8 1.0
CG B:GLU33 4.3 38.0 1.0
O B:HOH428 4.3 55.6 1.0
O B:HOH457 4.4 60.4 1.0
CG B:GLU75 4.4 39.6 1.0
O B:HOH420 4.7 37.6 1.0
O B:HOH417 4.8 55.6 1.0

Reference:

J.Osipiuk, M.Zhou, M.Gu, W.F.Anderson, A.Joachimiak. Spermidine N-Acetyltransferase From Vibrio Cholerae in Complex with 2-[N-Cyclohexylamino]Ethane Sulfonate. To Be Published.
Page generated: Wed Jul 9 00:48:21 2025

Last articles

Na in 6TB7
Na in 6TB1
Na in 6T99
Na in 6TA7
Na in 6T96
Na in 6T8A
Na in 6T89
Na in 6T88
Na in 6T87
Na in 6T86
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy