Atomistry » Calcium » PDB 4n66-4nhf » 4ngp
Atomistry »
  Calcium »
    PDB 4n66-4nhf »
      4ngp »

Calcium in PDB 4ngp: Crystal Structure of Glutamate Carboxypeptidase II in A Complex with Urea-Based Inhibitor

Enzymatic activity of Crystal Structure of Glutamate Carboxypeptidase II in A Complex with Urea-Based Inhibitor

All present enzymatic activity of Crystal Structure of Glutamate Carboxypeptidase II in A Complex with Urea-Based Inhibitor:
3.4.17.21;

Protein crystallography data

The structure of Crystal Structure of Glutamate Carboxypeptidase II in A Complex with Urea-Based Inhibitor, PDB code: 4ngp was solved by J.Tykvart, P.Pachl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.35 / 1.63
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 102.073, 130.414, 160.348, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 20.5

Other elements in 4ngp:

The structure of Crystal Structure of Glutamate Carboxypeptidase II in A Complex with Urea-Based Inhibitor also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Glutamate Carboxypeptidase II in A Complex with Urea-Based Inhibitor (pdb code 4ngp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Glutamate Carboxypeptidase II in A Complex with Urea-Based Inhibitor, PDB code: 4ngp:

Calcium binding site 1 out of 1 in 4ngp

Go back to Calcium Binding Sites List in 4ngp
Calcium binding site 1 out of 1 in the Crystal Structure of Glutamate Carboxypeptidase II in A Complex with Urea-Based Inhibitor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Glutamate Carboxypeptidase II in A Complex with Urea-Based Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca821

b:12.8
occ:1.00
 OE2 A:GLU436 2.3 13.2 1.0
O A:TYR272 2.3 13.1 1.0
O A:THR269 2.5 12.7 1.0
O A:HOH1136 2.5 11.5 1.0
OG1 A:THR269 2.5 12.5 1.0
OE1 A:GLU433 2.5 13.5 1.0
OE2 A:GLU433 2.5 11.8 1.0
CD A:GLU433 2.8 12.1 1.0
C A:THR269 3.3 12.3 1.0
CB A:THR269 3.3 13.8 1.0
CD A:GLU436 3.4 12.0 1.0
C A:TYR272 3.4 12.8 1.0
OE1 A:GLU436 3.9 11.5 1.0
CA A:THR269 4.0 13.4 1.0
N A:TYR272 4.0 12.1 1.0
CB A:ASP266 4.2 13.6 1.0
CA A:PRO273 4.2 14.9 1.0
N A:PRO270 4.3 11.8 1.0
N A:PRO273 4.3 13.2 1.0
N A:ALA274 4.3 14.3 1.0
CG A:GLU433 4.3 13.1 1.0
CA A:TYR272 4.3 12.8 1.0
N A:GLY271 4.5 14.0 1.0
C A:PRO273 4.5 15.5 1.0
N A:ASP266 4.5 11.8 1.0
CA A:PRO270 4.5 12.6 1.0
O A:ALA264 4.5 14.3 1.0
O A:ASP266 4.5 13.9 1.0
CG A:GLU436 4.6 12.2 1.0
CG2 A:THR269 4.6 14.0 1.0
N A:THR269 4.7 13.0 1.0
C A:PRO270 4.7 12.6 1.0
OD2 A:ASP266 4.8 14.1 1.0
CA A:ASP266 4.9 12.5 1.0
CB A:GLU436 4.9 12.4 1.0
CB A:ALA274 4.9 16.6 1.0
C A:GLY271 5.0 13.1 1.0

Reference:

J.Tykvart, J.Schimer, J.Barinkova, P.Pachl, L.Postova-Slavetinska, P.Majer, J.Konvalinka, P.Sacha. Rational Design of Urea-Based Glutamate Carboxypeptidase II (Gcpii) Inhibitors As Versatile Tools For Specific Drug Targeting and Delivery Bioorg.Med.Chem. 2014.
ISSN: ESSN 1464-3391
DOI: 10.1016/J.BMC.2014.05.061
Page generated: Wed Jul 9 00:51:05 2025

Last articles

Fe in 8OMY
Fe in 8OMX
Fe in 8OMM
Fe in 8OMC
Fe in 8OIE
Fe in 8OLT
Fe in 8OLP
Fe in 8OLH
Fe in 8OHY
Fe in 8K9E
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy