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Calcium in PDB 4noe: Crystal Structure of Ddrb Bound to 30B Ssdna

Protein crystallography data

The structure of Crystal Structure of Ddrb Bound to 30B Ssdna, PDB code: 4noe was solved by S.N.Sugiman-Marangos, Y.M.Weiss, M.S.Junop, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.88 / 2.20
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 131.760, 131.760, 102.280, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Ddrb Bound to 30B Ssdna (pdb code 4noe). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Ddrb Bound to 30B Ssdna, PDB code: 4noe:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4noe

Go back to Calcium Binding Sites List in 4noe
Calcium binding site 1 out of 2 in the Crystal Structure of Ddrb Bound to 30B Ssdna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Ddrb Bound to 30B Ssdna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca201

b:34.0
occ:1.00
OE1 B:GLU138 2.4 32.3 1.0
O B:HOH369 2.5 29.9 1.0
O B:HOH371 2.6 46.6 1.0
O B:HOH387 2.6 35.0 1.0
CD B:GLU138 3.1 36.0 1.0
CG B:GLU138 3.4 37.8 1.0
OE2 B:GLU138 4.1 31.5 1.0
NH2 B:ARG136 4.3 32.2 1.0
O B:GLU138 4.7 28.3 1.0
CB B:ALA141 4.8 25.8 1.0
CB B:GLU138 4.9 36.7 1.0

Calcium binding site 2 out of 2 in 4noe

Go back to Calcium Binding Sites List in 4noe
Calcium binding site 2 out of 2 in the Crystal Structure of Ddrb Bound to 30B Ssdna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Ddrb Bound to 30B Ssdna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca201

b:34.3
occ:1.00
OE2 D:GLU138 2.3 25.1 1.0
O D:HOH322 2.4 29.7 1.0
O D:HOH309 2.4 24.4 1.0
O D:HOH304 2.5 24.3 1.0
O D:HOH335 2.6 42.6 1.0
CD D:GLU138 3.4 35.6 1.0
O D:HOH330 4.2 28.8 1.0
NH2 D:ARG136 4.2 25.1 1.0
OE1 D:GLU138 4.3 37.2 1.0
CG D:GLU138 4.3 32.4 1.0
O D:VAL142 4.4 32.1 1.0
CB D:ALA141 4.7 20.7 1.0
O D:PRO143 4.7 34.6 1.0
OD2 D:ASP55 4.8 44.3 1.0

Reference:

S.N.Sugiman-Marangos, Y.M.Weiss, M.S.Junop. Crystal Structure of Ddrb Bound to 30B Ssdna To Be Published.
Page generated: Wed Jul 9 00:53:16 2025

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