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Calcium in PDB 4ovd: Crystal Structure of A Putative Peptidoglycan Glycosyltransferase From Atopobium Parvulum Dsm 20469

Enzymatic activity of Crystal Structure of A Putative Peptidoglycan Glycosyltransferase From Atopobium Parvulum Dsm 20469

All present enzymatic activity of Crystal Structure of A Putative Peptidoglycan Glycosyltransferase From Atopobium Parvulum Dsm 20469:
2.4.1.129;

Protein crystallography data

The structure of Crystal Structure of A Putative Peptidoglycan Glycosyltransferase From Atopobium Parvulum Dsm 20469, PDB code: 4ovd was solved by E.V.Filippova, Z.Wawrzak, O.Kiryukhina, G.Babnigg, S.Clancy, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.17 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 153.680, 45.510, 71.290, 90.00, 102.78, 90.00
R / Rfree (%) 17.9 / 23.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Peptidoglycan Glycosyltransferase From Atopobium Parvulum Dsm 20469 (pdb code 4ovd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Putative Peptidoglycan Glycosyltransferase From Atopobium Parvulum Dsm 20469, PDB code: 4ovd:

Calcium binding site 1 out of 1 in 4ovd

Go back to Calcium Binding Sites List in 4ovd
Calcium binding site 1 out of 1 in the Crystal Structure of A Putative Peptidoglycan Glycosyltransferase From Atopobium Parvulum Dsm 20469


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Peptidoglycan Glycosyltransferase From Atopobium Parvulum Dsm 20469 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca601

b:61.1
occ:1.00
 OG1 A:THR501 3.2 33.2 1.0
OG A:SER305 3.4 41.6 1.0
O A:HOH847 3.7 46.6 1.0
OG A:SER361 3.8 34.0 1.0
CB A:THR501 3.8 32.6 1.0
O A:THR501 3.9 31.5 1.0
C A:THR501 3.9 34.2 1.0
CB A:SER361 4.0 33.6 1.0
N A:GLY502 4.1 37.6 1.0
OG1 A:THR503 4.1 47.4 1.0
NZ A:LYS500 4.2 33.9 1.0
CA A:GLY502 4.2 37.4 1.0
CB A:SER305 4.3 36.0 1.0
C A:GLY502 4.4 32.5 1.0
N A:THR503 4.4 32.6 1.0
O A:HOH824 4.5 42.3 0.5
CA A:THR501 4.6 31.5 1.0
OG1 A:THR486 4.8 34.4 1.0
O A:HOH725 4.9 36.0 1.0
CB A:THR503 5.0 43.1 1.0
O A:GLY502 5.0 34.3 1.0

Reference:

E.V.Filippova, Z.Wawrzak, O.Kiryukhina, G.Babnigg, S.Clancy, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics (Mcsg). Crystal Structure of A Putative Peptidoglycan Glycosyltransferase From Atopobium Parvulum Dsm 20469 To Be Published.
Page generated: Wed Jul 9 01:09:59 2025

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