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Calcium in PDB 4pzl: The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4

Enzymatic activity of The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4

All present enzymatic activity of The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4:
2.7.4.3;

Protein crystallography data

The structure of The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4, PDB code: 4pzl was solved by K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.15 / 2.10
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 65.022, 65.022, 214.732, 90.00, 90.00, 120.00
R / Rfree (%) 19.1 / 23.7

Calcium Binding Sites:

The binding sites of Calcium atom in the The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4 (pdb code 4pzl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4, PDB code: 4pzl:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4pzl

Go back to Calcium Binding Sites List in 4pzl
Calcium binding site 1 out of 2 in the The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:28.6
occ:1.00
OD1 B:ASN25 2.4 29.1 1.0
O A:HOH412 2.4 29.9 1.0
OD1 A:ASN25 2.4 29.5 1.0
O A:HOH414 2.4 27.8 1.0
O B:HOH405 2.4 24.4 1.0
O B:HOH436 2.4 26.4 1.0
CG B:ASN25 3.4 36.2 1.0
CG A:ASN25 3.5 33.2 1.0
ND2 B:ASN25 3.9 31.1 1.0
ND2 A:ASN25 4.0 32.1 1.0
O B:ASN25 4.1 28.8 1.0
O A:ASN25 4.2 29.4 1.0
O A:ASP76 4.4 31.4 1.0
C A:ASN25 4.5 35.3 1.0
C B:ASN25 4.5 28.7 1.0
O B:ASP76 4.5 30.0 1.0
O A:HOH444 4.6 38.7 1.0
CB B:ASN25 4.7 29.7 1.0
CB A:ASN25 4.7 27.7 1.0
O B:HOH439 4.7 33.1 1.0
OD1 A:ASN78 4.7 35.2 1.0
CA B:ASN25 4.8 27.3 1.0
CA A:ASN25 4.8 28.8 1.0
CB B:ASP76 4.8 24.1 1.0
O B:HOH422 4.8 39.4 1.0
CA B:ASP76 4.9 23.4 1.0
CB A:ASP76 4.9 31.3 1.0
CA A:ASP76 4.9 31.8 1.0

Calcium binding site 2 out of 2 in 4pzl

Go back to Calcium Binding Sites List in 4pzl
Calcium binding site 2 out of 2 in the The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca301

b:34.5
occ:1.00
OD1 C:ASN25 2.3 41.5 1.0
O D:HOH431 2.3 41.5 1.0
O C:HOH421 2.3 33.9 1.0
OD1 D:ASN25 2.3 42.5 1.0
O D:HOH432 2.4 38.1 1.0
O C:HOH472 2.4 34.3 1.0
CG C:ASN25 3.4 42.5 1.0
CG D:ASN25 3.4 41.9 1.0
ND2 D:ASN25 3.9 44.6 1.0
ND2 C:ASN25 3.9 39.7 1.0
O D:ASN25 4.1 43.1 1.0
O C:ASN25 4.3 41.6 1.0
O C:HOH483 4.4 36.8 1.0
C D:ASN25 4.4 40.6 1.0
O C:ASP76 4.4 41.2 1.0
O D:ASP76 4.4 45.7 1.0
C C:ASN25 4.5 35.0 1.0
CB C:ASN25 4.6 40.5 1.0
CB D:ASN25 4.6 41.0 1.0
CA D:ASN25 4.7 39.2 1.0
CA C:ASN25 4.7 35.0 1.0
CB C:ASP76 4.8 33.9 1.0
CA D:ASP76 4.8 45.7 1.0
O D:HOH401 4.9 41.0 1.0
CB D:ASP76 4.9 42.4 1.0
CA C:ASP76 4.9 40.4 1.0
N D:ILE26 5.0 43.4 1.0
O D:HOH407 5.0 50.6 1.0

Reference:

K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak. The Crystal Structure of Adenylate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4 To Be Published.
Page generated: Sun Jul 14 12:16:41 2024

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