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Calcium in PDB 4u49: Crystal Structure of Pectate Lyase PEL3 From Pectobacterium Carotovorum with Two Monomers in the A.U

Protein crystallography data

The structure of Crystal Structure of Pectate Lyase PEL3 From Pectobacterium Carotovorum with Two Monomers in the A.U, PDB code: 4u49 was solved by L.Ballut, P.Gouet, V.Shevchik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.65 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.600, 72.000, 83.700, 90.00, 101.30, 90.00
R / Rfree (%) 17.8 / 21.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Pectate Lyase PEL3 From Pectobacterium Carotovorum with Two Monomers in the A.U (pdb code 4u49). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Pectate Lyase PEL3 From Pectobacterium Carotovorum with Two Monomers in the A.U, PDB code: 4u49:

Calcium binding site 1 out of 1 in 4u49

Go back to Calcium Binding Sites List in 4u49
Calcium binding site 1 out of 1 in the Crystal Structure of Pectate Lyase PEL3 From Pectobacterium Carotovorum with Two Monomers in the A.U


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Pectate Lyase PEL3 From Pectobacterium Carotovorum with Two Monomers in the A.U within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca401

b:43.7
occ:1.00
OD1 B:ASN216 2.4 34.0 1.0
O B:PRO221 2.5 45.1 1.0
OD2 B:ASP194 2.5 39.3 1.0
O B:HOH513 2.5 47.4 1.0
O B:ILE195 2.6 24.8 1.0
O B:HOH641 3.2 34.7 1.0
C B:PRO221 3.5 49.7 1.0
CG B:ASP194 3.5 33.8 1.0
CG B:ASN216 3.6 30.9 1.0
C B:ILE195 3.8 25.5 1.0
OD1 B:ASP194 3.8 36.9 1.0
O B:THR217 3.9 41.5 1.0
N B:PRO221 3.9 52.8 1.0
C B:GLY220 4.1 50.8 1.0
N B:THR217 4.1 29.9 1.0
OG1 B:THR217 4.1 47.0 1.0
CA B:PRO221 4.2 49.7 1.0
CD B:PRO221 4.2 48.9 1.0
ND2 B:ASN216 4.3 36.1 1.0
N B:ILE195 4.4 21.1 1.0
O B:GLY220 4.4 49.9 1.0
N B:GLY222 4.4 47.3 1.0
C B:ASP194 4.6 23.2 1.0
CB B:PRO221 4.6 48.0 1.0
CA B:GLY220 4.6 53.1 1.0
CA B:ILE195 4.6 22.8 1.0
CA B:ASN216 4.6 23.6 1.0
CA B:GLY222 4.6 44.4 1.0
CB B:ASP194 4.7 26.7 1.0
CB B:ASN216 4.7 23.0 1.0
N B:CYS196 4.7 21.8 1.0
C B:THR217 4.8 39.4 1.0
CA B:CYS196 4.8 25.4 1.0
O B:GLY223 4.8 52.7 1.0
CA B:THR217 4.9 35.9 1.0
C B:ASN216 4.9 27.1 1.0
O B:ASP194 5.0 21.8 1.0
CA B:ASP194 5.0 24.1 1.0
O B:CYS196 5.0 27.6 1.0
N B:GLY220 5.0 52.3 1.0

Reference:

L.Ballut, P.Gouet, V.E.Shevchik, C.Pineau, N.Guschinskaya. Crystal Structure of Pectate Lyase PEL3 From Pectobacterium Carotovorum with One Monomer in the A.U To Be Published.
Page generated: Wed Jul 9 02:13:10 2025

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