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Calcium in PDB 5buq: Unliganded Form of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, Solved at 1.98 Angstroms

Enzymatic activity of Unliganded Form of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, Solved at 1.98 Angstroms

All present enzymatic activity of Unliganded Form of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, Solved at 1.98 Angstroms:
6.2.1.26;

Protein crystallography data

The structure of Unliganded Form of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, Solved at 1.98 Angstroms, PDB code: 5buq was solved by Y.Chen, Y.Sun, H.Song, Z.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.27 / 1.98
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 82.780, 76.910, 93.870, 90.00, 114.93, 90.00
R / Rfree (%) 16.1 / 20

Calcium Binding Sites:

The binding sites of Calcium atom in the Unliganded Form of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, Solved at 1.98 Angstroms (pdb code 5buq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Unliganded Form of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, Solved at 1.98 Angstroms, PDB code: 5buq:

Calcium binding site 1 out of 1 in 5buq

Go back to Calcium Binding Sites List in 5buq
Calcium binding site 1 out of 1 in the Unliganded Form of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, Solved at 1.98 Angstroms


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Unliganded Form of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, Solved at 1.98 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca502

b:12.4
occ:1.00
 O B:VAL409 2.3 7.7 1.0
O B:LEU404 2.4 7.6 1.0
O B:HIS406 2.5 10.6 1.0
O B:HOH662 2.5 15.7 1.0
C B:VAL409 3.5 9.2 1.0
C B:LEU404 3.6 5.5 1.0
C B:HIS406 3.6 11.3 1.0
C B:SER405 4.1 11.3 1.0
N B:HIS406 4.2 13.6 1.0
N B:VAL409 4.2 10.9 1.0
CA B:VAL409 4.3 8.1 1.0
O B:PRO407 4.3 12.9 1.0
CA B:PRO407 4.3 9.9 1.0
O B:SER405 4.3 11.9 1.0
C B:PRO407 4.4 11.3 1.0
CA B:SER405 4.4 11.2 1.0
N B:PRO407 4.4 10.7 1.0
N B:SER405 4.5 5.4 1.0
CD1 B:LEU404 4.5 11.6 1.0
CA B:LEU404 4.5 9.7 1.0
CA B:HIS406 4.6 12.4 1.0
NE2 B:HIS433 4.6 11.4 1.0
N B:ALA410 4.6 7.4 1.0
CB B:VAL409 4.6 6.7 1.0
CD2 B:HIS433 4.6 11.9 1.0
CG B:LEU404 4.7 12.9 1.0
CA B:ALA410 4.7 8.2 1.0

Reference:

Y.Chen, Y.Sun, H.Song, Z.Guo. Structural Basis For the Atp-Dependent Configuration of Adenylation Active Site in Bacillus Subtilis O-Succinylbenzoyl-Coa Synthetase J.Biol.Chem. V. 290 23971 2015.
ISSN: ESSN 1083-351X
PubMed: 26276389
DOI: 10.1074/JBC.M115.676304
Page generated: Sun Jul 14 16:57:01 2024

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