Calcium in PDB 5c5l: Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs T62E / L125E at Cryogenic Temperature

Enzymatic activity of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs T62E / L125E at Cryogenic Temperature

All present enzymatic activity of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs T62E / L125E at Cryogenic Temperature:
3.1.31.1;

Protein crystallography data

The structure of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs T62E / L125E at Cryogenic Temperature, PDB code: 5c5l was solved by P.C.Bell-Upp, J.L.Schlessman, B.Garcia-Moreno E., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	34.39 / 1.75
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	30.709, 58.135, 34.796, 90.00, 98.79, 90.00
*R / R_free (%)*	14.4 / 19.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs T62E / L125E at Cryogenic Temperature (pdb code 5c5l). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs T62E / L125E at Cryogenic Temperature, PDB code: 5c5l:

Calcium binding site 1 out of 1 in 5c5l

Go back to

Calcium Binding Sites List in 5c5l

Calcium binding site 1 out of 1 in the Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs T62E / L125E at Cryogenic Temperature

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs T62E / L125E at Cryogenic Temperature within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ca201 b:10.0 occ:1.00	OD1	A:ASP40	2.6	10.1	1.0
	O	A:THR41	2.7	7.6	1.0
	O	A:HOH305	2.8	9.2	1.0
	O	A:HOH319	2.8	16.3	1.0
	OD2	A:ASP21	2.9	7.4	1.0
	O	A:HOH360	2.9	9.2	1.0
	O5P	A:THP202	3.2	8.8	1.0
	CG	A:ASP21	3.7	7.3	1.0
	O	A:HOH310	3.8	6.1	1.0
	C	A:THR41	3.8	7.8	1.0
	O	A:HOH381	3.8	23.2	1.0
	CG	A:ASP40	3.8	9.6	1.0
	OD1	A:ASP21	3.8	8.4	1.0
	N	A:THR41	3.9	7.4	1.0
	OG1	A:THR41	4.1	7.9	1.0
	P2	A:THP202	4.1	10.2	1.0
	NH2	A:ARG35	4.1	7.8	1.0
	O4P	A:THP202	4.2	9.9	1.0
	CA	A:THR41	4.4	7.6	1.0
	OE2	A:GLU43	4.5	31.2	1.0
	O6P	A:THP202	4.5	12.1	1.0
	C	A:ASP40	4.6	7.4	1.0
	OD2	A:ASP40	4.6	10.9	1.0
	CA	A:ASP40	4.6	7.6	1.0
	CZ	A:ARG35	4.7	7.9	1.0
	O	A:HOH312	4.8	19.0	1.0
	C	A:PRO42	4.8	9.8	1.0
	CB	A:ASP40	4.8	8.4	1.0
	CB	A:THR41	4.9	7.5	1.0
	NE	A:ARG35	4.9	7.7	1.0
	O	A:PRO42	4.9	9.6	1.0
	N	A:GLU43	4.9	11.2	1.0
	N	A:PRO42	5.0	8.6	1.0

Reference:

P.C.Bell-Upp, J.L.Schlessman, B.Garcia-Moreno E.. Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs T62E / L125E at Cryogenic Temperature To Be Published.

Page generated: Wed Jul 9 04:30:11 2025

Last articles

Mg in 5NRG
Mg in 5O5W
Mg in 5O4V
Mg in 5O4C
Mg in 5O48
Mg in 5O44
Mg in 5O2S
Mg in 5O3W
Mg in 5O3V
Mg in 5O26

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy