Calcium in PDB 5d5d: In Meso in Situ Serial X-Ray Crystallography Structure of Alge at 100 K

The structure of In Meso in Situ Serial X-Ray Crystallography Structure of Alge at 100 K, PDB code: 5d5d was solved by P.Ma, C.-Y.Huang, V.Olieric, K.Diederichs, M.Wang, M.Caffrey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.22 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.330, 66.350, 176.840, 90.00, 90.00, 90.00
R / Rfree (%)	21.9 / 26

The structure of In Meso in Situ Serial X-Ray Crystallography Structure of Alge at 100 K also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Calcium atom in the In Meso in Situ Serial X-Ray Crystallography Structure of Alge at 100 K (pdb code 5d5d). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the In Meso in Situ Serial X-Ray Crystallography Structure of Alge at 100 K, PDB code: 5d5d:

Calcium binding site 1 out of 1 in the In Meso in Situ Serial X-Ray Crystallography Structure of Alge at 100 K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of In Meso in Situ Serial X-Ray Crystallography Structure of Alge at 100 K within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:48.7 occ:1.00 O A:GLY63 2.2 47.4 1.0 OD2 A:ASP55 2.3 46.7 1.0 O A:ALA61 2.4 45.5 1.0 OD1 A:ASP57 2.5 45.7 1.0 OD2 A:ASP57 2.5 44.5 1.0 CG A:ASP57 2.8 45.3 1.0 OD1 A:ASP55 2.8 50.8 1.0 CG A:ASP55 2.9 46.4 1.0 C A:GLY63 3.3 48.0 1.0 C A:ALA61 3.6 44.9 1.0 N A:GLY63 3.8 47.0 1.0 CA A:GLY59 4.1 40.7 1.0 N A:ALA61 4.1 39.3 1.0 C A:PRO62 4.2 49.7 1.0 CA A:GLY63 4.2 45.1 1.0 N A:GLY64 4.3 43.4 1.0 N A:GLY59 4.3 40.2 1.0 CB A:ASP57 4.3 40.7 1.0 CA A:GLY64 4.4 43.4 1.0 CB A:ASP55 4.4 41.0 1.0 CA A:ALA61 4.4 39.2 1.0 CA A:PRO62 4.5 43.3 1.0 N A:PRO62 4.5 42.5 1.0 N A:THR60 4.5 39.7 1.0 C A:GLY59 4.6 44.1 1.0 O A:PRO62 4.7 50.9 1.0 N A:ASP57 4.9 41.2 1.0 CB A:ALA61 4.9 39.6 1.0 C A:GLY64 4.9 47.3 1.0

C.Y.Huang, V.Olieric, P.Ma, N.Howe, L.Vogeley, X.Liu, R.Warshamanage, T.Weinert, E.Panepucci, B.Kobilka, K.Diederichs, M.Wang, M.Caffrey. In Meso in Situ Serial X-Ray Crystallography of Soluble and Membrane Proteins at Cryogenic Temperatures. Acta Crystallogr D Struct V. 72 93 2016BIOL.
ISSN: ISSN 2059-7983
PubMed: 26894538
DOI: 10.1107/S2059798315021683