Calcium in PDB 5deh: Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs N100D at Cryogenic Temperature

Enzymatic activity of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs N100D at Cryogenic Temperature

All present enzymatic activity of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs N100D at Cryogenic Temperature:
3.1.31.1;

Protein crystallography data

The structure of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs N100D at Cryogenic Temperature, PDB code: 5deh was solved by L.A.Skerritt, P.C.Bell-Upp, M.A.Siegler, J.L.Schlessman, B.Garcia-Morenoe., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	38.35 / 1.70
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	31.178, 60.353, 38.425, 90.00, 93.52, 90.00
*R / R_free (%)*	16.9 / 20

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs N100D at Cryogenic Temperature (pdb code 5deh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs N100D at Cryogenic Temperature, PDB code: 5deh:

Calcium binding site 1 out of 1 in 5deh

Go back to

Calcium Binding Sites List in 5deh

Calcium binding site 1 out of 1 in the Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs N100D at Cryogenic Temperature

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs N100D at Cryogenic Temperature within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ca201 b:20.2 occ:1.00	OD1	A:ASP40	2.7	17.3	1.0
	O	A:HOH309	2.8	15.9	1.0
	OE2	A:GLU43	2.8	35.6	1.0
	OD2	A:ASP21	2.8	14.4	1.0
	O	A:HOH344	2.9	17.4	1.0
	O	A:THR41	2.9	17.0	1.0
	O6P	A:THP202	3.1	16.2	1.0
	O	A:HOH324	3.4	30.8	1.0
	CG	A:ASP21	3.6	13.1	1.0
	OD1	A:ASP21	3.7	12.6	1.0
	CG	A:ASP40	3.9	16.3	1.0
	CD	A:GLU43	3.9	33.5	1.0
	O	A:HOH361	4.0	35.5	1.0
	C	A:THR41	4.0	17.2	1.0
	P2	A:THP202	4.0	15.7	1.0
	O	A:HOH330	4.0	23.6	1.0
	NH2	A:ARG35	4.1	11.7	1.0
	N	A:THR41	4.1	14.3	1.0
	OG1	A:THR41	4.1	15.2	1.0
	O4P	A:THP202	4.2	15.5	1.0
	CA	A:THR41	4.5	15.9	1.0
	O5P	A:THP202	4.6	17.3	1.0
	O	A:HOH357	4.6	24.3	1.0
	OE1	A:GLU43	4.6	31.5	1.0
	OD2	A:ASP40	4.6	19.6	1.0
	CA	A:ASP40	4.6	13.3	1.0
	CZ	A:ARG35	4.7	11.3	1.0
	C	A:ASP40	4.8	14.3	1.0
	NE	A:ARG35	4.8	11.4	1.0
	CB	A:ASP40	4.9	14.2	1.0
	CG	A:GLU43	4.9	31.3	1.0
	CB	A:THR41	4.9	15.7	1.0

Reference:

L.A.Skerritt, P.C.Bell-Upp, M.A.Siegler, J.L.Schlessman, B.Garcia-Moreno E.. Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs N100D at Cryogenic Temperature To Be Published.

Page generated: Wed Jul 9 05:07:45 2025

Last articles

Mg in 3G6Y
Mg in 3G6X
Mg in 3G6W
Mg in 3G6V
Mg in 3G6K
Mg in 3G5A
Mg in 3G5S
Mg in 3G58
Mg in 3G4T
Mg in 3G4L

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy