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Calcium in PDB 5f2q: C-Type Lectin From Bothrops Jararacussu

Protein crystallography data

The structure of C-Type Lectin From Bothrops Jararacussu, PDB code: 5f2q was solved by R.A.P.De Padua, M.P.Pinheiro, M.A.Sartim, S.V.Sampaio, M.C.Nonato, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.42 / 2.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 91.250, 115.150, 156.790, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 26.5

Other elements in 5f2q:

The structure of C-Type Lectin From Bothrops Jararacussu also contains other interesting chemical elements:

Sodium (Na) 10 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the C-Type Lectin From Bothrops Jararacussu (pdb code 5f2q). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the C-Type Lectin From Bothrops Jararacussu, PDB code: 5f2q:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 10 in 5f2q

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Calcium binding site 1 out of 10 in the C-Type Lectin From Bothrops Jararacussu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of C-Type Lectin From Bothrops Jararacussu within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:49.8
occ:1.00
OD1 A:ASP120 2.3 53.5 1.0
OD1 A:ASN119 2.4 50.0 1.0
O A:HOH301 2.4 51.8 1.0
O A:ASP120 2.4 54.3 1.0
OE1 A:GLU104 2.4 54.1 1.0
OE1 A:GLN96 2.5 55.5 1.0
OD1 A:ASP98 2.5 58.7 1.0
H1 A:HOH301 2.8 62.1 1.0
O A:HOH302 3.0 43.7 1.0
H2 A:HOH301 3.0 62.1 1.0
CG A:ASP120 3.1 54.7 1.0
H1 A:HOH302 3.2 52.5 1.0
H A:ASP120 3.3 59.3 1.0
CG A:ASN119 3.3 53.0 1.0
HD21 A:ASN119 3.3 62.5 1.0
CG A:ASP98 3.4 58.1 1.0
CD A:GLU104 3.4 55.0 1.0
C A:ASP120 3.5 53.3 1.0
CD A:GLN96 3.6 58.5 1.0
OD2 A:ASP98 3.6 60.0 1.0
OD2 A:ASP120 3.7 58.8 1.0
H2 A:HOH302 3.7 52.5 1.0
ND2 A:ASN119 3.7 52.1 1.0
N A:ASP120 3.7 49.4 1.0
H A:ASP98 3.7 68.9 1.0
OE2 A:GLU104 3.8 57.8 1.0
CA A:ASP120 4.0 50.3 1.0
HE22 A:GLN96 4.0 75.6 1.0
H A:TYR100 4.1 72.3 1.0
CB A:ASP120 4.1 52.1 1.0
NE2 A:GLN96 4.2 63.0 1.0
H A:HIS99 4.3 73.3 1.0
HB2 A:TYR100 4.3 72.1 1.0
HB3 A:GLU104 4.4 71.1 1.0
N A:ASP98 4.5 57.5 1.0
HD22 A:ASN119 4.5 62.5 1.0
HA A:GLN121 4.6 63.3 1.0
HA A:ASN119 4.6 59.9 1.0
HA A:PRO97 4.6 69.3 1.0
C A:ASN119 4.6 47.8 1.0
HB2 A:GLU104 4.6 71.1 1.0
CB A:ASN119 4.7 53.7 1.0
HB2 A:ASP120 4.7 62.5 1.0
N A:GLN121 4.7 54.9 1.0
CG A:GLU104 4.7 56.4 1.0
HB3 A:GLN96 4.7 58.3 1.0
HG3 A:GLN96 4.7 64.3 1.0
CG A:GLN96 4.7 53.6 1.0
CB A:ASP98 4.7 56.9 1.0
HB3 A:ASP120 4.8 62.5 1.0
N A:HIS99 4.8 61.1 1.0
CB A:GLU104 4.8 59.3 1.0
HB3 A:TYR100 4.8 72.1 1.0
CA A:ASN119 4.9 49.9 1.0
N A:TYR100 4.9 60.2 1.0
HA A:ASP120 4.9 60.4 1.0

Calcium binding site 2 out of 10 in 5f2q

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Calcium binding site 2 out of 10 in the C-Type Lectin From Bothrops Jararacussu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of C-Type Lectin From Bothrops Jararacussu within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca201

b:45.3
occ:1.00
OD1 B:ASP120 2.3 46.9 1.0
OE1 B:GLU104 2.3 51.9 1.0
O B:HOH301 2.3 39.6 1.0
OD1 B:ASN119 2.4 47.1 1.0
OD1 B:ASP98 2.4 48.7 1.0
OE1 B:GLN96 2.5 51.8 1.0
O B:ASP120 2.5 46.1 1.0
H1 B:HOH301 2.8 47.5 1.0
H2 B:HOH301 2.9 47.5 1.0
H1 B:HOH302 2.9 59.8 1.0
O B:HOH302 3.2 49.9 1.0
CD B:GLU104 3.2 54.0 1.0
CD B:GLN96 3.3 46.7 1.0
CG B:ASP120 3.3 49.5 1.0
CG B:ASP98 3.4 48.8 1.0
H2 B:HOH302 3.4 59.8 1.0
OE2 B:GLU104 3.4 55.2 1.0
CG B:ASN119 3.4 44.7 1.0
H B:ASP120 3.5 52.9 1.0
HE22 B:GLN96 3.5 53.4 1.0
HD21 B:ASN119 3.5 53.1 1.0
C B:ASP120 3.6 46.6 1.0
H B:ASP98 3.7 60.0 1.0
NE2 B:GLN96 3.7 44.5 1.0
OD2 B:ASP98 3.7 44.6 1.0
N B:ASP120 3.8 44.0 1.0
ND2 B:ASN119 3.8 44.2 1.0
OD2 B:ASP120 4.0 47.8 1.0
HB2 B:TYR100 4.1 63.3 1.0
CA B:ASP120 4.1 43.3 1.0
HB3 B:GLN96 4.1 57.2 1.0
H B:TYR100 4.2 64.7 1.0
CB B:ASP120 4.3 46.0 1.0
CG B:GLN96 4.5 47.9 1.0
HE21 B:GLN96 4.5 53.4 1.0
N B:ASP98 4.5 50.0 1.0
HB3 B:GLU104 4.5 59.2 1.0
HB3 B:TYR100 4.5 63.3 1.0
HA B:ASN119 4.6 53.0 1.0
HG3 B:GLN96 4.6 57.4 1.0
HA B:PRO97 4.6 57.4 1.0
CG B:GLU104 4.6 51.2 1.0
C B:ASN119 4.6 42.2 1.0
HA B:GLN121 4.6 51.0 1.0
HD22 B:ASN119 4.7 53.1 1.0
CB B:ASN119 4.7 43.7 1.0
CB B:ASP98 4.7 47.0 1.0
CB B:TYR100 4.8 52.8 1.0
HB2 B:GLU104 4.8 59.2 1.0
N B:GLN121 4.8 47.9 1.0
CB B:GLN96 4.8 47.6 1.0
H B:HIS99 4.8 56.8 1.0
HB2 B:ASP120 4.8 55.2 1.0
CA B:ASN119 4.9 44.2 1.0
CB B:GLU104 4.9 49.3 1.0
HB3 B:ASP98 5.0 56.4 1.0
HB3 B:ASP120 5.0 55.2 1.0

Calcium binding site 3 out of 10 in 5f2q

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Calcium binding site 3 out of 10 in the C-Type Lectin From Bothrops Jararacussu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of C-Type Lectin From Bothrops Jararacussu within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca201

b:69.3
occ:1.00
OE1 C:GLU104 2.4 66.7 1.0
OD1 C:ASP120 2.4 66.8 1.0
OD1 C:ASN119 2.4 59.4 1.0
O C:ASP120 2.4 64.4 1.0
OD1 C:ASP98 2.4 66.6 1.0
OE1 C:GLN96 2.5 65.5 1.0
HD21 C:ASN119 3.1 73.2 1.0
HE22 C:GLN96 3.2 79.2 1.0
CG C:ASP98 3.3 65.2 1.0
CD C:GLN96 3.3 67.1 1.0
CG C:ASN119 3.3 63.0 1.0
CD C:GLU104 3.3 68.3 1.0
OD2 C:ASP98 3.4 63.9 1.0
CG C:ASP120 3.5 66.1 1.0
NE2 C:GLN96 3.5 66.0 1.0
ND2 C:ASN119 3.5 61.0 1.0
C C:ASP120 3.6 65.5 1.0
OE2 C:GLU104 3.7 65.6 1.0
H C:ASP120 3.7 77.9 1.0
H C:ASP98 3.8 80.9 1.0
N C:ASP120 4.0 64.9 1.0
OD2 C:ASP120 4.1 64.8 1.0
HB2 C:TYR100 4.2 85.3 1.0
H C:TYR100 4.2 86.1 1.0
CA C:ASP120 4.2 65.3 1.0
HA C:GLN121 4.3 78.5 1.0
HE21 C:GLN96 4.3 79.2 1.0
HB3 C:GLU104 4.4 85.9 1.0
HD22 C:ASN119 4.4 73.2 1.0
CB C:ASP120 4.4 65.8 1.0
N C:ASP98 4.5 67.4 1.0
HB2 C:GLU104 4.5 85.9 1.0
HG2 C:GLN121 4.5 81.3 1.0
HA C:PRO97 4.6 79.0 1.0
CG C:GLN96 4.6 66.7 1.0
CG C:GLU104 4.6 69.2 1.0
N C:GLN121 4.6 62.0 1.0
CB C:ASN119 4.7 66.8 1.0
CB C:ASP98 4.7 65.8 1.0
HB3 C:GLN96 4.7 78.9 1.0
HA C:ASN119 4.7 78.0 1.0
HG3 C:GLN96 4.7 80.1 1.0
CB C:GLU104 4.7 71.6 1.0
C C:ASN119 4.7 64.9 1.0
HB3 C:TYR100 4.7 85.3 1.0
H C:HIS99 4.8 83.1 1.0
CA C:GLN121 4.9 65.4 1.0
CB C:TYR100 4.9 71.1 1.0
HB2 C:ASP120 4.9 79.0 1.0
CA C:ASN119 5.0 65.0 1.0

Calcium binding site 4 out of 10 in 5f2q

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Calcium binding site 4 out of 10 in the C-Type Lectin From Bothrops Jararacussu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of C-Type Lectin From Bothrops Jararacussu within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca201

b:58.4
occ:1.00
OD1 D:ASP120 2.3 59.3 1.0
H2 D:HOH301 2.3 64.4 1.0
OE2 D:GLU104 2.4 67.5 1.0
O D:ASP120 2.4 59.5 1.0
O D:HOH301 2.4 53.6 1.0
OE1 D:GLN96 2.5 59.0 1.0
OD1 D:ASP98 2.5 62.4 1.0
OD1 D:ASN119 2.5 61.8 1.0
H1 D:HOH301 2.7 64.4 1.0
CG D:ASP120 3.2 60.3 1.0
CD D:GLU104 3.2 65.5 1.0
CG D:ASP98 3.4 62.4 1.0
H1 D:HOH302 3.4 72.5 1.0
OE1 D:GLU104 3.5 64.5 1.0
CD D:GLN96 3.5 59.3 1.0
C D:ASP120 3.5 59.9 1.0
H D:ASP120 3.5 70.6 1.0
O D:HOH302 3.5 60.5 1.0
CG D:ASN119 3.5 58.0 1.0
HD21 D:ASN119 3.6 69.5 1.0
HE22 D:GLN96 3.6 70.7 1.0
H D:ASP98 3.6 75.8 1.0
OD2 D:ASP98 3.7 64.6 1.0
OD2 D:ASP120 3.8 60.9 1.0
N D:ASP120 3.8 58.8 1.0
NE2 D:GLN96 3.9 58.9 1.0
ND2 D:ASN119 3.9 57.9 1.0
CA D:ASP120 4.0 58.9 1.0
HB2 D:TYR100 4.2 80.5 1.0
CB D:ASP120 4.2 61.3 1.0
H D:TYR100 4.2 77.0 1.0
HB3 D:GLU104 4.3 75.2 1.0
H2 D:HOH302 4.3 72.5 1.0
N D:ASP98 4.4 63.2 1.0
HA D:PRO97 4.4 71.5 1.0
HA D:GLN121 4.5 74.3 1.0
CG D:GLU104 4.5 61.9 1.0
HB2 D:GLU104 4.5 75.2 1.0
N D:GLN121 4.6 60.5 1.0
C D:ASN119 4.7 59.5 1.0
HB3 D:GLN96 4.7 68.4 1.0
CB D:GLU104 4.7 62.7 1.0
HA D:ASN119 4.7 70.3 1.0
CB D:ASP98 4.7 61.6 1.0
HB2 D:ASP120 4.7 73.5 1.0
CG D:GLN96 4.7 58.1 1.0
HE21 D:GLN96 4.8 70.7 1.0
HD22 D:ASN119 4.8 69.5 1.0
H D:HIS99 4.8 72.7 1.0
CB D:ASN119 4.8 58.8 1.0
HB3 D:ASP120 4.8 73.5 1.0
HG3 D:GLN96 4.9 69.7 1.0
HB3 D:TYR100 4.9 80.5 1.0
CB D:TYR100 5.0 67.1 1.0
HA D:ASP120 5.0 70.7 1.0
CA D:ASP98 5.0 64.7 1.0

Calcium binding site 5 out of 10 in 5f2q

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Calcium binding site 5 out of 10 in the C-Type Lectin From Bothrops Jararacussu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of C-Type Lectin From Bothrops Jararacussu within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca201

b:64.7
occ:1.00
OD1 E:ASP120 2.3 64.8 1.0
O E:HOH305 2.4 53.0 1.0
OE2 E:GLU104 2.4 69.1 1.0
OE1 E:GLN96 2.4 61.2 1.0
OD1 E:ASN119 2.4 64.1 1.0
O E:ASP120 2.5 62.1 1.0
H2 E:HOH305 2.5 63.6 1.0
OD1 E:ASP98 2.5 71.9 1.0
HE22 E:GLN96 2.9 76.4 1.0
CD E:GLU104 3.1 69.4 1.0
CD E:GLN96 3.1 62.7 1.0
OE1 E:GLU104 3.2 67.8 1.0
H1 E:HOH305 3.2 63.6 1.0
NE2 E:GLN96 3.3 63.7 1.0
CG E:ASP98 3.4 69.1 1.0
CG E:ASP120 3.4 64.8 1.0
CG E:ASN119 3.5 66.2 1.0
HD21 E:ASN119 3.5 75.8 1.0
OD2 E:ASP98 3.6 68.9 1.0
C E:ASP120 3.6 61.7 1.0
H E:ASP120 3.7 67.5 1.0
ND2 E:ASN119 3.9 63.2 1.0
H E:ASP98 4.0 79.1 1.0
N E:ASP120 4.0 56.2 1.0
OD2 E:ASP120 4.1 65.2 1.0
HE21 E:GLN96 4.1 76.4 1.0
HB2 E:TYR100 4.1 86.3 1.0
CA E:ASP120 4.2 60.5 1.0
H E:TYR100 4.2 80.1 1.0
CB E:ASP120 4.4 61.9 1.0
HA E:GLN121 4.4 75.8 1.0
HB3 E:TYR100 4.5 86.3 1.0
CG E:GLN96 4.5 64.4 1.0
CG E:GLU104 4.5 67.2 1.0
HB3 E:GLU104 4.5 79.3 1.0
HB3 E:GLN96 4.6 75.0 1.0
N E:ASP98 4.6 65.9 1.0
HA E:PRO97 4.6 75.2 1.0
HG3 E:GLN96 4.7 77.2 1.0
N E:GLN121 4.7 62.4 1.0
HB2 E:GLU104 4.7 79.3 1.0
CB E:ASP98 4.8 63.9 1.0
HD22 E:ASN119 4.8 75.8 1.0
H E:HIS99 4.8 80.7 1.0
CB E:TYR100 4.8 71.9 1.0
CB E:ASN119 4.8 63.9 1.0
HB2 E:ASP120 4.8 74.2 1.0
C E:ASN119 4.8 57.0 1.0
CB E:GLU104 4.9 66.1 1.0
HA E:ASN119 4.9 69.9 1.0
HG2 E:GLU104 4.9 80.7 1.0

Calcium binding site 6 out of 10 in 5f2q

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Calcium binding site 6 out of 10 in the C-Type Lectin From Bothrops Jararacussu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of C-Type Lectin From Bothrops Jararacussu within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca201

b:49.9
occ:1.00
OD1 F:ASP120 2.3 50.8 1.0
OD1 F:ASP98 2.3 52.3 1.0
OD1 F:ASN119 2.4 46.3 1.0
O F:ASP120 2.4 49.0 1.0
OE1 F:GLN96 2.4 48.0 1.0
OE2 F:GLU104 2.5 46.2 1.0
O F:HOH302 2.5 37.5 1.0
H2 F:HOH302 2.5 45.0 1.0
H1 F:HOH302 2.6 45.0 1.0
CG F:ASP98 2.9 50.1 1.0
HD21 F:ASN119 3.0 53.0 1.0
OD2 F:ASP98 3.0 48.9 1.0
CG F:ASN119 3.2 45.7 1.0
CD F:GLU104 3.2 52.1 1.0
HE22 F:GLN96 3.3 59.0 1.0
CD F:GLN96 3.3 47.8 1.0
CG F:ASP120 3.4 50.1 1.0
OE1 F:GLU104 3.4 49.1 1.0
ND2 F:ASN119 3.4 44.2 1.0
H F:ASP120 3.4 56.0 1.0
C F:ASP120 3.5 47.0 1.0
H F:ASP98 3.6 58.9 1.0
NE2 F:GLN96 3.6 49.1 1.0
N F:ASP120 3.8 46.6 1.0
CA F:ASP120 4.1 43.8 1.0
OD2 F:ASP120 4.2 46.6 1.0
HB2 F:TYR100 4.2 64.2 1.0
HD22 F:ASN119 4.2 53.0 1.0
H F:TYR100 4.3 64.0 1.0
HB3 F:GLU104 4.3 64.3 1.0
CB F:ASP98 4.3 48.1 1.0
N F:ASP98 4.3 49.1 1.0
CB F:ASP120 4.3 47.0 1.0
HE21 F:GLN96 4.4 59.0 1.0
HA F:GLN121 4.4 58.9 1.0
CG F:GLU104 4.5 52.8 1.0
CB F:ASN119 4.6 46.4 1.0
HA F:PRO97 4.6 59.3 1.0
HA F:ASN119 4.6 56.9 1.0
CG F:GLN96 4.6 47.7 1.0
HB2 F:GLU104 4.6 64.3 1.0
HG3 F:GLN96 4.6 57.2 1.0
HB3 F:ASP98 4.6 57.7 1.0
H F:HIS99 4.6 63.0 1.0
C F:ASN119 4.6 49.3 1.0
N F:GLN121 4.6 50.2 1.0
HB3 F:TYR100 4.7 64.2 1.0
CB F:GLU104 4.7 53.6 1.0
HB3 F:GLN96 4.8 55.5 1.0
CA F:ASP98 4.8 51.4 1.0
CA F:ASN119 4.8 47.4 1.0
HB2 F:ASP120 4.9 56.5 1.0
CB F:TYR100 4.9 53.5 1.0
HB2 F:ASP98 5.0 57.7 1.0
HB2 F:ASN119 5.0 55.7 1.0

Calcium binding site 7 out of 10 in 5f2q

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Calcium binding site 7 out of 10 in the C-Type Lectin From Bothrops Jararacussu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of C-Type Lectin From Bothrops Jararacussu within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca201

b:47.7
occ:1.00
H1 G:HOH302 2.3 40.0 1.0
OD1 G:ASP120 2.3 45.1 1.0
OE1 G:GLU104 2.4 52.2 1.0
OD1 G:ASP98 2.4 48.4 1.0
OD1 G:ASN119 2.4 41.2 1.0
OE1 G:GLN96 2.5 46.6 1.0
O G:HOH302 2.5 33.4 1.0
HE22 G:GLN96 2.5 52.8 1.0
O G:ASP120 2.6 47.0 1.0
NE2 G:GLN96 3.0 44.0 1.0
CD G:GLN96 3.0 47.9 1.0
CG G:ASP120 3.2 49.0 1.0
H2 G:HOH302 3.2 40.0 1.0
CG G:ASP98 3.3 47.2 1.0
H G:ASP120 3.4 59.1 1.0
HD21 G:ASN119 3.4 51.9 1.0
CG G:ASN119 3.4 40.2 1.0
CD G:GLU104 3.5 53.6 1.0
OD2 G:ASP98 3.5 45.9 1.0
H G:ASP98 3.6 62.2 1.0
C G:ASP120 3.6 46.2 1.0
HE21 G:GLN96 3.7 52.8 1.0
OD2 G:ASP120 3.8 52.9 1.0
ND2 G:ASN119 3.8 43.3 1.0
N G:ASP120 3.9 49.3 1.0
H G:TYR100 4.0 64.5 1.0
OE2 G:GLU104 4.1 51.4 1.0
CA G:ASP120 4.1 46.7 1.0
HB2 G:TYR100 4.1 61.7 1.0
HB3 G:GLU104 4.2 60.0 1.0
CB G:ASP120 4.3 44.0 1.0
N G:ASP98 4.4 51.9 1.0
CG G:GLN96 4.4 46.4 1.0
H G:HIS99 4.5 60.5 1.0
HB2 G:GLU104 4.5 60.0 1.0
HB3 G:GLN96 4.5 55.0 1.0
HB3 G:TYR100 4.5 61.7 1.0
HA G:PRO97 4.6 60.0 1.0
CB G:ASP98 4.6 46.2 1.0
HG3 G:GLN96 4.6 55.7 1.0
HA G:GLN121 4.7 55.0 1.0
HD22 G:ASN119 4.7 51.9 1.0
CB G:GLU104 4.7 50.0 1.0
CG G:GLU104 4.7 52.3 1.0
HA G:ASN119 4.8 53.2 1.0
CB G:ASN119 4.8 44.4 1.0
CB G:TYR100 4.8 51.4 1.0
N G:GLN121 4.8 47.1 1.0
HB2 G:ASP120 4.8 52.8 1.0
C G:ASN119 4.8 44.4 1.0
N G:HIS99 4.9 50.4 1.0
HB3 G:ASP98 4.9 55.5 1.0
N G:TYR100 4.9 53.7 1.0
HB3 G:ASP120 4.9 52.8 1.0
CA G:ASP98 4.9 49.4 1.0
CB G:GLN96 5.0 45.9 1.0

Calcium binding site 8 out of 10 in 5f2q

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Calcium binding site 8 out of 10 in the C-Type Lectin From Bothrops Jararacussu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of C-Type Lectin From Bothrops Jararacussu within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca201

b:69.4
occ:1.00
OD1 H:ASP120 2.3 69.7 1.0
OD1 H:ASN119 2.4 69.2 1.0
O H:HOH301 2.4 65.6 1.0
OD2 H:ASP98 2.5 72.9 1.0
O H:ASP120 2.5 72.6 1.0
OE1 H:GLN96 2.5 64.0 1.0
HE22 H:GLN96 2.7 77.9 1.0
H1 H:HOH301 2.9 78.7 1.0
H2 H:HOH301 3.0 78.7 1.0
CG H:ASP98 3.2 74.2 1.0
CD H:GLN96 3.2 64.6 1.0
NE2 H:GLN96 3.2 64.9 1.0
OD1 H:ASP98 3.2 72.3 1.0
OE2 H:GLU104 3.3 77.5 1.0
OE1 H:GLU104 3.4 78.9 1.0
H H:ASP120 3.4 78.7 1.0
CG H:ASN119 3.4 65.5 1.0
CG H:ASP120 3.5 69.0 1.0
HD21 H:ASN119 3.5 73.9 1.0
C H:ASP120 3.6 66.8 1.0
CD H:GLU104 3.7 79.6 1.0
ND2 H:ASN119 3.9 61.6 1.0
N H:ASP120 3.9 65.6 1.0
HE21 H:GLN96 4.0 77.9 1.0
OD2 H:ASP120 4.2 71.4 1.0
CA H:ASP120 4.2 66.0 1.0
HB2 H:TYR100 4.2 96.0 1.0
CB H:ASP120 4.4 68.2 1.0
HA H:GLN121 4.5 85.3 1.0
CB H:ASP98 4.6 74.4 1.0
CG H:GLN96 4.6 67.0 1.0
HA H:ASN119 4.7 75.9 1.0
HD22 H:ASN119 4.7 73.9 1.0
HB3 H:ASP98 4.7 89.2 1.0
H H:TYR100 4.7 0.1 1.0
CB H:ASN119 4.8 65.8 1.0
N H:GLN121 4.8 65.6 1.0
HG3 H:GLN96 4.8 80.4 1.0
H H:ASP98 4.8 84.4 1.0
C H:ASN119 4.8 61.0 1.0
HA H:PRO97 4.9 81.3 1.0
HB3 H:GLN96 4.9 84.0 1.0
HB2 H:ASP120 4.9 81.8 1.0
HB3 H:GLU104 5.0 94.4 1.0
HB3 H:TYR100 5.0 96.0 1.0

Calcium binding site 9 out of 10 in 5f2q

Go back to Calcium Binding Sites List in 5f2q
Calcium binding site 9 out of 10 in the C-Type Lectin From Bothrops Jararacussu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of C-Type Lectin From Bothrops Jararacussu within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Ca201

b:49.0
occ:1.00
OD1 I:ASP120 2.3 50.0 1.0
OE2 I:GLU104 2.3 54.9 1.0
OD1 I:ASN119 2.3 43.2 1.0
O I:HOH301 2.5 34.5 1.0
O I:ASP120 2.5 48.9 1.0
H2 I:HOH301 2.5 41.5 1.0
OD1 I:ASP98 2.5 51.3 1.0
OE1 I:GLN96 2.5 46.1 1.0
OD2 I:ASP98 2.5 47.8 1.0
CG I:ASP98 2.8 50.7 1.0
H1 I:HOH301 2.8 41.5 1.0
HE22 I:GLN96 3.0 55.7 1.0
HD21 I:ASN119 3.2 53.2 1.0
CG I:ASN119 3.2 45.4 1.0
CD I:GLN96 3.3 44.9 1.0
CD I:GLU104 3.4 56.1 1.0
CG I:ASP120 3.4 49.0 1.0
NE2 I:GLN96 3.4 46.4 1.0
ND2 I:ASN119 3.6 44.4 1.0
C I:ASP120 3.6 47.2 1.0
H I:ASP120 3.6 58.1 1.0
H I:ASP98 3.7 61.3 1.0
OE1 I:GLU104 3.8 56.3 1.0
N I:ASP120 3.9 48.4 1.0
CA I:ASP120 4.1 48.3 1.0
HB2 I:TYR100 4.1 63.1 1.0
OD2 I:ASP120 4.2 46.0 1.0
CB I:ASP98 4.2 51.5 1.0
HE21 I:GLN96 4.2 55.7 1.0
HB3 I:GLU104 4.3 63.2 1.0
H I:TYR100 4.3 60.2 1.0
HB3 I:ASP98 4.4 61.8 1.0
CB I:ASP120 4.4 49.5 1.0
HD22 I:ASN119 4.4 53.2 1.0
N I:ASP98 4.5 51.1 1.0
HA I:GLN121 4.5 58.5 1.0
HA I:ASN119 4.5 58.4 1.0
CB I:ASN119 4.6 52.2 1.0
C I:ASN119 4.6 47.9 1.0
CG I:GLU104 4.6 51.7 1.0
CG I:GLN96 4.6 45.3 1.0
HB2 I:GLU104 4.7 63.2 1.0
HB3 I:TYR100 4.7 63.1 1.0
N I:GLN121 4.7 46.8 1.0
HG3 I:GLN96 4.8 54.4 1.0
CB I:GLU104 4.8 52.7 1.0
HA I:PRO97 4.8 59.4 1.0
CA I:ASN119 4.8 48.6 1.0
HB2 I:ASP98 4.8 61.8 1.0
H I:HIS99 4.9 63.0 1.0
CB I:TYR100 4.9 52.5 1.0
CA I:ASP98 4.9 49.9 1.0
HB2 I:ASP120 4.9 59.4 1.0
HB3 I:GLN96 4.9 54.2 1.0
HB2 I:ASN119 4.9 62.7 1.0

Calcium binding site 10 out of 10 in 5f2q

Go back to Calcium Binding Sites List in 5f2q
Calcium binding site 10 out of 10 in the C-Type Lectin From Bothrops Jararacussu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of C-Type Lectin From Bothrops Jararacussu within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Ca201

b:71.9
occ:1.00
OD1 J:ASP120 2.4 70.5 1.0
O J:HOH301 2.4 67.6 1.0
OD1 J:ASN119 2.4 67.6 1.0
OE1 J:GLU104 2.4 72.5 1.0
O J:ASP120 2.5 67.3 1.0
OD1 J:ASP98 2.5 74.0 1.0
OE1 J:GLN96 2.5 64.5 1.0
H2 J:HOH301 2.7 81.1 1.0
HE22 J:GLN96 2.9 80.7 1.0
O J:HOH302 3.0 59.1 1.0
H1 J:HOH301 3.0 81.1 1.0
H2 J:HOH302 3.2 70.9 1.0
CD J:GLN96 3.3 67.7 1.0
CG J:ASP120 3.3 71.3 1.0
H J:ASP120 3.3 77.4 1.0
CD J:GLU104 3.4 75.0 1.0
NE2 J:GLN96 3.4 67.3 1.0
CG J:ASN119 3.4 68.2 1.0
HD21 J:ASN119 3.4 82.2 1.0
C J:ASP120 3.5 68.4 1.0
CG J:ASP98 3.5 74.3 1.0
N J:ASP120 3.7 64.5 1.0
OE2 J:GLU104 3.8 73.1 1.0
ND2 J:ASN119 3.8 68.5 1.0
H1 J:HOH302 3.8 70.9 1.0
H J:ASP98 3.9 89.6 1.0
OD2 J:ASP120 3.9 70.5 1.0
OD2 J:ASP98 3.9 73.7 1.0
CA J:ASP120 4.0 65.6 1.0
HB3 J:GLU104 4.0 86.3 1.0
H J:TYR100 4.1 91.1 1.0
HE21 J:GLN96 4.2 80.7 1.0
CB J:ASP120 4.2 68.3 1.0
HB3 J:TYR100 4.3 96.6 1.0
HB2 J:TYR100 4.5 96.6 1.0
HA J:ASN119 4.5 73.4 1.0
CG J:GLU104 4.6 74.5 1.0
C J:ASN119 4.6 62.6 1.0
N J:ASP98 4.6 74.7 1.0
H J:HIS99 4.6 93.5 1.0
HA J:GLN121 4.6 79.1 1.0
HD22 J:ASN119 4.6 82.2 1.0
HA J:PRO97 4.6 81.6 1.0
CB J:GLU104 4.6 71.9 1.0
CB J:ASN119 4.7 65.0 1.0
HB2 J:GLU104 4.7 86.3 1.0
HB2 J:ASP120 4.7 82.0 1.0
CG J:GLN96 4.7 67.0 1.0
N J:GLN121 4.7 66.7 1.0
CB J:ASP98 4.8 71.7 1.0
HB3 J:GLN96 4.8 82.2 1.0
CB J:TYR100 4.9 80.5 1.0
CA J:ASN119 4.9 61.1 1.0
N J:TYR100 4.9 75.9 1.0
HB3 J:ASP120 4.9 82.0 1.0
HG3 J:GLN96 4.9 80.4 1.0
HA J:ASP120 4.9 78.7 1.0
N J:HIS99 5.0 77.9 1.0

Reference:

R.A.P.De Padua, M.P.Pinheiro, M.A.Sartim, S.S.Vilela, M.C.Nonato. C-Type Lectin From Bothrops Jararacussu To Be Published.
Page generated: Sun Jul 14 19:03:04 2024

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