Calcium in PDB 5fk0: Yeast Delta-Cop-I Mu-Homology Domain

The structure of Yeast Delta-Cop-I Mu-Homology Domain, PDB code: 5fk0 was solved by R.J.Suckling, P.R.Evans, D.J.Owen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.41 / 3.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	86.900, 148.630, 222.720, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 23.33

The binding sites of Calcium atom in the Yeast Delta-Cop-I Mu-Homology Domain (pdb code 5fk0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Yeast Delta-Cop-I Mu-Homology Domain, PDB code: 5fk0:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Yeast Delta-Cop-I Mu-Homology Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Yeast Delta-Cop-I Mu-Homology Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:96.4 occ:1.00 O A:HOH2056 2.1 53.9 1.0 O A:HOH2055 2.5 61.7 1.0 O A:GLN518 2.7 76.7 1.0 O A:HOH2058 3.0 61.1 1.0 C A:GLN518 3.9 81.2 1.0 CA A:GLN518 4.5 88.9 1.0 CG A:GLN518 4.6 94.4 1.0 OH A:TYR532 4.7 87.6 1.0 N A:SER519 5.0 75.3 1.0

Calcium binding site 2 out of 2 in the Yeast Delta-Cop-I Mu-Homology Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Yeast Delta-Cop-I Mu-Homology Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:64.2 occ:1.00 OD1 B:ASP444 2.2 88.3 1.0 O B:ILE445 2.6 63.8 1.0 O B:HOH2041 2.7 63.5 1.0 O B:HOH2040 2.9 76.0 1.0 CG B:ASP444 3.3 86.1 1.0 C B:ILE445 3.7 62.8 1.0 OD2 B:ASP444 3.7 86.3 1.0 N B:ILE445 4.2 61.7 1.0 OG1 B:THR447 4.2 76.4 1.0 C B:ASP444 4.5 64.0 1.0 N B:ASN446 4.5 64.8 1.0 CA B:ILE445 4.5 60.5 1.0 CB B:ASP444 4.5 77.9 1.0 CA B:ASN446 4.6 75.1 1.0 CA B:ASP444 4.7 68.2 1.0 N B:THR447 4.8 82.0 1.0

R.J.Suckling, P.P.Poon, S.M.Travis, I.V.Majoul, F.M.Hughson, P.R.Evans, R.Duden, D.J.Owen. Structural Basis For the Binding of Tryptophan-Based Motifs By Delta-Cop. Proc.Natl.Acad.Sci.Usa V. 112 14242 2015.
ISSN: ISSN 0027-8424
PubMed: 26578768
DOI: 10.1073/PNAS.1506186112