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Calcium in PDB 5ihj: Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57

Protein crystallography data

The structure of Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57, PDB code: 5ihj was solved by K.H.Piepenbrink, E.J.Sundberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.93 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 175.070, 56.636, 49.997, 90.00, 91.60, 90.00
R / Rfree (%) 21.1 / 24.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57 (pdb code 5ihj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57, PDB code: 5ihj:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 5ihj

Go back to Calcium Binding Sites List in 5ihj
Calcium binding site 1 out of 3 in the Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1206

b:95.3
occ:1.00
OG A:SER337 2.8 36.4 1.0
OE2 A:GLU45 3.5 74.3 1.0
CB A:SER337 3.6 22.9 1.0
NH2 A:ARG66 3.8 24.8 1.0
CE2 A:TYR341 3.8 32.7 1.0
CB A:TYR1027 4.0 26.3 1.0
CD2 A:TYR341 4.4 31.4 1.0
CD1 A:TYR1027 4.4 33.5 1.0
CD A:GLU45 4.5 66.9 1.0
CG A:TYR1027 4.6 35.0 1.0
CZ A:ARG66 4.7 28.9 1.0
NH1 A:ARG66 4.7 30.9 1.0
OE1 A:GLU45 4.7 65.1 1.0
O A:ALA1023 4.8 20.6 1.0
CZ A:TYR341 4.8 34.1 1.0
N A:ALA338 4.8 17.7 1.0
C A:SER337 4.9 19.9 1.0
CA A:SER337 4.9 22.6 1.0
OH A:TYR341 5.0 30.6 1.0
CA A:TYR1027 5.0 21.7 1.0
O A:HOH1362 5.0 45.1 1.0

Calcium binding site 2 out of 3 in 5ihj

Go back to Calcium Binding Sites List in 5ihj
Calcium binding site 2 out of 3 in the Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1207

b:77.7
occ:1.00
OG1 A:THR345 3.3 12.9 1.0
O A:TYR341 4.2 21.4 1.0
CB A:THR345 4.3 15.4 1.0
CB A:ASN367 4.4 18.1 1.0
CG A:ASN367 4.7 23.0 1.0
C A:TYR341 4.7 17.0 1.0
CG2 A:THR345 4.7 14.4 1.0
O A:ASN367 4.8 15.7 1.0
CB A:TYR341 4.8 24.2 1.0
OD1 A:ASN367 4.9 26.8 1.0

Calcium binding site 3 out of 3 in 5ihj

Go back to Calcium Binding Sites List in 5ihj
Calcium binding site 3 out of 3 in the Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1208

b:71.5
occ:1.00
O A:HOH1368 2.2 41.9 1.0
OD1 A:ASP120 2.3 25.5 1.0
O A:HOH1364 2.3 49.2 1.0
CG A:ASP120 3.4 28.9 1.0
OD2 A:ASP120 3.9 33.9 1.0
CB A:ASP120 4.7 24.6 1.0

Reference:

K.H.Piepenbrink, E.Lillehoj, C.M.Harding, J.W.Labonte, X.Zuo, C.A.Rapp, R.S.Munson, S.E.Goldblum, M.F.Feldman, J.J.Gray, E.J.Sundberg. Structural Diversity in the Type IV Pili of Multidrug-Resistant Acinetobacter. J.Biol.Chem. V. 291 22924 2016.
ISSN: ESSN 1083-351X
PubMed: 27634041
DOI: 10.1074/JBC.M116.751099
Page generated: Wed Jul 9 06:48:27 2025

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