Calcium in PDB 5jbt: Mesotrypsin in Complex with Cleaved Amyloid Precursor Like Protein 2 Inhibitor (APLP2)

The structure of Mesotrypsin in Complex with Cleaved Amyloid Precursor Like Protein 2 Inhibitor (APLP2), PDB code: 5jbt was solved by O.Kayode, R.Wang, D.Pendlebury, A.Soares, E.S.Radisky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.51 / 1.40
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	98.956, 54.539, 56.632, 90.00, 90.00, 90.00
R / Rfree (%)	16.3 / 19.9

The binding sites of Calcium atom in the Mesotrypsin in Complex with Cleaved Amyloid Precursor Like Protein 2 Inhibitor (APLP2) (pdb code 5jbt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Mesotrypsin in Complex with Cleaved Amyloid Precursor Like Protein 2 Inhibitor (APLP2), PDB code: 5jbt:

Calcium binding site 1 out of 1 in the Mesotrypsin in Complex with Cleaved Amyloid Precursor Like Protein 2 Inhibitor (APLP2)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Mesotrypsin in Complex with Cleaved Amyloid Precursor Like Protein 2 Inhibitor (APLP2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:17.3 occ:1.00 O A:HOH463 2.2 19.1 1.0 OE2 A:GLU70 2.3 15.7 1.0 OE2 A:GLU80 2.3 18.6 1.0 O A:VAL75 2.3 19.7 1.0 O A:ASN72 2.3 16.5 1.0 OE1 A:GLU77 2.5 75.1 1.0 CD A:GLU70 3.4 16.3 1.0 CD A:GLU80 3.4 18.1 1.0 C A:VAL75 3.5 20.5 1.0 C A:ASN72 3.5 15.7 1.0 CD A:GLU77 3.6 72.3 1.0 OE1 A:GLU70 3.7 16.7 1.0 CG A:GLU80 3.9 15.6 1.0 N A:GLU77 4.1 18.7 1.0 CG A:GLU77 4.2 44.1 1.0 CA A:ILE73 4.2 17.7 1.0 N A:LEU76 4.3 22.7 1.0 CA A:LEU76 4.3 20.5 1.0 N A:ILE73 4.3 15.2 1.0 N A:VAL75 4.3 19.6 1.0 O A:HOH407 4.4 26.1 1.0 N A:ASN72 4.4 16.2 1.0 CA A:VAL75 4.5 20.2 1.0 CA A:ASN72 4.5 14.7 1.0 OE2 A:GLU77 4.5 87.3 1.0 OE1 A:GLU80 4.5 21.5 1.0 C A:ILE73 4.5 18.9 1.0 CG A:GLU70 4.7 14.8 1.0 C A:LEU76 4.7 20.9 1.0 CB A:GLU77 4.7 27.8 1.0 N A:HIS71 4.8 16.1 1.0 CB A:ASN72 4.8 16.6 1.0 O A:HOH591 4.8 18.1 1.0 CA A:GLU70 4.8 14.3 1.0 O A:ILE73 4.8 20.4 1.0 N A:LYS74 4.9 16.8 1.0 CB A:GLU70 4.9 14.1 1.0

O.Kayode, R.Wang, D.F.Pendlebury, I.Cohen, R.D.Henin, A.Hockla, A.S.Soares, N.Papo, T.R.Caulfield, E.S.Radisky. An Acrobatic Substrate Metamorphosis Reveals A Requirement For Substrate Conformational Dynamics in Trypsin Proteolysis. J. Biol. Chem. V. 291 26304 2016.
ISSN: ESSN 1083-351X
PubMed: 27810896
DOI: 10.1074/JBC.M116.758417