Calcium in PDB 5m06: Crystal Structure of Mycobacterium Tuberculosis Pkni Kinase Domain

All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Pkni Kinase Domain:
2.7.11.1;

The structure of Crystal Structure of Mycobacterium Tuberculosis Pkni Kinase Domain, PDB code: 5m06 was solved by T.Wagner, M.N.Lisa, M.Alexandre, N.Barilone, B.Raynal, P.M.Alzari, M.Bellinzoni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.09 / 2.00
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	60.004, 69.541, 257.417, 90.00, 90.00, 90.00
R / Rfree (%)	21.2 / 23.9

The binding sites of Calcium atom in the Crystal Structure of Mycobacterium Tuberculosis Pkni Kinase Domain (pdb code 5m06). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Mycobacterium Tuberculosis Pkni Kinase Domain, PDB code: 5m06:

Calcium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Tuberculosis Pkni Kinase Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mycobacterium Tuberculosis Pkni Kinase Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca302 b:88.6 occ:1.00 OD1 B:ASN142 2.3 42.0 1.0 O B:HOH417 2.4 54.0 1.0 OD2 B:ASP159 2.4 74.9 1.0 CG B:ASN142 3.3 53.5 1.0 CG B:ASP159 3.6 64.8 1.0 O B:HOH465 3.7 52.0 1.0 ND2 B:ASN142 3.8 38.9 1.0 O2B B:ADP301 4.1 87.6 1.0 CB B:ASP159 4.1 45.0 1.0 O B:ALA141 4.2 42.8 1.0 O2A B:ADP301 4.2 83.1 1.0 NZ B:LYS41 4.3 70.6 1.0 O3A B:ADP301 4.5 87.0 1.0 O1B B:ADP301 4.5 90.0 1.0 CB B:ASN142 4.6 37.8 1.0 CA B:ASN142 4.6 39.0 1.0 C B:ALA141 4.6 42.6 1.0 OD1 B:ASP159 4.6 66.7 1.0 PB B:ADP301 4.6 88.9 1.0 N B:ASN142 4.8 39.2 1.0 PA B:ADP301 5.0 83.6 1.0

M.N.Lisa, T.Wagner, M.Alexandre, N.Barilone, B.Raynal, P.M.Alzari, M.Bellinzoni. The Crystal Structure of Pkni From Mycobacterium Tuberculosis Shows An Inactive, Pseudokinase-Like Conformation. Febs J. V. 284 602 2017.
ISSN: ISSN 1742-4658
PubMed: 28054744
DOI: 10.1111/FEBS.14003