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Calcium in PDB 5mnl: Cationic Trypsin in Complex with Benzylamine (Deuterated Sample at 295 K)

Enzymatic activity of Cationic Trypsin in Complex with Benzylamine (Deuterated Sample at 295 K)

All present enzymatic activity of Cationic Trypsin in Complex with Benzylamine (Deuterated Sample at 295 K):
3.4.21.4;

Protein crystallography data

The structure of Cationic Trypsin in Complex with Benzylamine (Deuterated Sample at 295 K), PDB code: 5mnl was solved by J.Schiebel, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.47 / 1.04
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.315, 56.941, 66.710, 90.00, 90.00, 90.00
R / Rfree (%) 9.3 / 10.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Cationic Trypsin in Complex with Benzylamine (Deuterated Sample at 295 K) (pdb code 5mnl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cationic Trypsin in Complex with Benzylamine (Deuterated Sample at 295 K), PDB code: 5mnl:

Calcium binding site 1 out of 1 in 5mnl

Go back to Calcium Binding Sites List in 5mnl
Calcium binding site 1 out of 1 in the Cationic Trypsin in Complex with Benzylamine (Deuterated Sample at 295 K)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cationic Trypsin in Complex with Benzylamine (Deuterated Sample at 295 K) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:9.3
occ:1.00
OE1 A:GLU70 2.3 10.7 1.0
O A:VAL75 2.3 10.8 1.0
OE2 A:GLU80 2.3 11.2 1.0
O A:ASN72 2.3 9.8 1.0
O A:HOH445 2.4 12.4 1.0
O A:HOH402 2.4 12.9 1.0
CD A:GLU70 3.3 9.4 1.0
CD A:GLU80 3.4 10.4 1.0
C A:VAL75 3.4 9.9 1.0
C A:ASN72 3.5 8.7 1.0
OE2 A:GLU70 3.8 11.9 1.0
CG A:GLU80 3.8 13.4 1.0
H A:ASP71 3.8 11.4 1.0
HA A:GLU70 3.9 10.7 1.0
CA A:VAL76 4.1 12.2 1.0
N A:GLU77 4.1 12.1 1.0
HB3 A:ASN72 4.2 12.6 1.0
H A:ASN72 4.2 11.1 1.0
N A:VAL76 4.2 11.5 1.0
HB2 A:GLU77 4.2 17.8 1.0
OE1 A:GLU77 4.3 15.0 1.0
N A:VAL75 4.3 9.9 1.0
CA A:ILE73 4.3 9.2 1.0
N A:ILE73 4.3 9.0 1.0
N A:ASN72 4.4 9.3 1.0
CA A:ASN72 4.4 9.4 1.0
CG A:GLU77 4.4 16.0 1.0
CA A:VAL75 4.5 10.5 1.0
OE1 A:GLU80 4.5 12.2 1.0
O A:HOH443 4.5 15.7 1.0
HB3 A:GLU70 4.5 11.2 1.0
C A:ILE73 4.6 8.9 1.0
N A:ASP71 4.6 9.5 1.0
CG A:GLU70 4.6 9.7 1.0
HB A:VAL75 4.6 14.2 1.0
C A:VAL76 4.6 12.6 1.0
CA A:GLU70 4.7 8.9 1.0
H2 A:HOH437 4.7 13.0 1.0
CB A:GLU77 4.8 14.8 1.0
CD A:GLU77 4.8 16.8 1.0
CB A:ASN72 4.8 10.5 1.0
O A:HOH531 4.8 28.6 1.0
CB A:GLU70 4.8 9.3 1.0
N A:ASN74 4.9 8.9 1.0
O A:ILE73 5.0 10.6 1.0
HG2 A:GLU70 5.0 11.6 1.0

Reference:

J.Schiebel, A.Heine, G.Klebe. Cationic Trypsin in Complex with Benzylamine (Deuterated Sample at 295 K) To Be Published.
Page generated: Wed Jul 9 08:27:50 2025

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