Atomistry » Calcium » PDB 5moq-5n2z » 5muw
Atomistry »
  Calcium »
    PDB 5moq-5n2z »
      5muw »

Calcium in PDB 5muw: Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex

Enzymatic activity of Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex

All present enzymatic activity of Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex:
3.6.1.15;

Calcium Binding Sites:

The binding sites of Calcium atom in the Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex (pdb code 5muw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex, PDB code: 5muw:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 5muw

Go back to Calcium Binding Sites List in 5muw
Calcium binding site 1 out of 6 in the Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca400

b:65.1
occ:1.00
 OG A:SER133 2.2 40.5 1.0
O2B A:ADP401 2.2 38.8 1.0
OE1 A:GLU150 3.3 66.8 1.0
CB A:SER133 3.3 34.1 1.0
PB A:ADP401 3.4 37.3 1.0
O3B A:ADP401 3.4 33.4 1.0
O2A A:ADP401 3.9 45.9 1.0
OD1 A:ASP187 4.0 34.6 1.0
OE2 A:GLU153 4.1 37.5 1.0
N A:SER133 4.1 31.9 1.0
OD2 A:ASP187 4.2 49.4 1.0
CA A:SER133 4.2 32.3 1.0
O3A A:ADP401 4.3 43.5 1.0
CD A:GLU150 4.3 59.4 1.0
O1B A:ADP401 4.5 37.7 1.0
CG A:ASP187 4.6 36.8 1.0
PA A:ADP401 4.6 49.0 1.0
O1A A:ADP401 4.8 50.1 1.0
OE2 A:GLU150 4.9 22.3 1.0
NH2 A:ARG147 5.0 74.1 1.0

Calcium binding site 2 out of 6 in 5muw

Go back to Calcium Binding Sites List in 5muw
Calcium binding site 2 out of 6 in the Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca400

b:55.1
occ:1.00
 OG B:SER133 2.3 36.2 1.0
O2B B:ADP401 2.6 29.5 1.0
OE1 B:GLU150 3.2 52.2 1.0
CB B:SER133 3.5 27.2 1.0
OD1 B:ASP187 3.8 37.4 1.0
O3B B:ADP401 3.8 24.1 1.0
PB B:ADP401 3.8 29.3 1.0
OE2 B:GLU153 3.9 42.7 1.0
CD B:GLU150 4.0 61.3 1.0
OD2 B:ASP187 4.1 35.7 1.0
O2A B:ADP401 4.2 44.9 1.0
CG B:ASP187 4.4 36.2 1.0
N B:SER133 4.5 27.9 1.0
OE2 B:GLU150 4.5 26.6 1.0
CA B:SER133 4.5 26.8 1.0
NH2 B:ARG147 4.6 49.2 1.0
O3A B:ADP401 4.8 37.5 1.0
CD B:GLU153 4.9 63.9 1.0
CG B:GLU150 4.9 45.4 1.0
O1B B:ADP401 4.9 27.9 1.0

Calcium binding site 3 out of 6 in 5muw

Go back to Calcium Binding Sites List in 5muw
Calcium binding site 3 out of 6 in the Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Ca400

b:49.8
occ:1.00
 OG I:SER133 2.4 36.7 1.0
O2B I:ADP401 2.5 33.5 1.0
CB I:SER133 3.1 31.1 1.0
OE1 I:GLU150 3.1 40.9 1.0
OE2 I:GLU153 3.3 42.5 1.0
O2A I:ADP401 3.5 52.8 1.0
PB I:ADP401 3.7 38.5 1.0
O3B I:ADP401 3.9 37.8 1.0
CD I:GLU153 4.2 71.6 1.0
OE1 I:GLU153 4.2 71.9 1.0
O3A I:ADP401 4.3 48.4 1.0
CD I:GLU150 4.4 59.2 1.0
PA I:ADP401 4.4 54.2 1.0
OD1 I:ASP187 4.4 27.1 1.0
CA I:SER133 4.4 29.0 1.0
N I:SER133 4.5 28.5 1.0
OD2 I:ASP187 4.5 38.2 1.0
NH2 I:ARG147 4.6 69.6 1.0
O1A I:ADP401 4.6 54.3 1.0
CG I:ASP187 4.9 30.1 1.0
O1B I:ADP401 5.0 38.1 1.0

Calcium binding site 4 out of 6 in 5muw

Go back to Calcium Binding Sites List in 5muw
Calcium binding site 4 out of 6 in the Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Ca400

b:48.8
occ:1.00
 OG J:SER133 2.4 45.7 1.0
O2B J:ADP401 2.6 52.2 1.0
OE1 J:GLU150 3.4 45.1 1.0
CB J:SER133 3.5 33.5 1.0
O3B J:ADP401 3.6 52.5 1.0
PB J:ADP401 3.7 51.3 1.0
OE2 J:GLU153 3.7 36.3 1.0
O2A J:ADP401 3.8 54.6 1.0
OD1 J:ASP187 4.1 22.7 1.0
OD2 J:ASP187 4.2 28.8 1.0
CD J:GLU150 4.3 46.0 1.0
O3A J:ADP401 4.5 52.8 1.0
N J:SER133 4.5 30.0 1.0
CA J:SER133 4.6 30.5 1.0
CG J:ASP187 4.6 26.1 1.0
CD J:GLU153 4.6 54.6 1.0
PA J:ADP401 4.7 54.6 1.0
NH2 J:ARG147 4.7 52.5 1.0
OE1 J:GLU153 4.8 56.8 1.0
O1B J:ADP401 4.8 48.3 1.0
OE2 J:GLU150 5.0 22.1 1.0

Calcium binding site 5 out of 6 in 5muw

Go back to Calcium Binding Sites List in 5muw
Calcium binding site 5 out of 6 in the Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Ca400

b:61.6
occ:1.00
 OG K:SER133 2.4 43.8 1.0
O2B K:ADP401 2.6 49.2 1.0
OE1 K:GLU150 3.1 61.4 1.0
O3B K:ADP401 3.5 51.2 1.0
OE2 K:GLU153 3.5 47.1 1.0
CB K:SER133 3.6 39.5 1.0
PB K:ADP401 3.7 50.6 1.0
O2A K:ADP401 3.8 65.1 1.0
CD K:GLU150 4.1 54.0 1.0
OD1 K:ASP187 4.2 29.9 1.0
OD2 K:ASP187 4.4 45.1 1.0
CD K:GLU153 4.5 72.7 1.0
O3A K:ADP401 4.5 57.5 1.0
NH2 K:ARG147 4.6 39.8 1.0
OE1 K:GLU153 4.6 80.8 1.0
N K:SER133 4.6 38.2 1.0
CA K:SER133 4.7 38.0 1.0
PA K:ADP401 4.7 65.5 1.0
CG K:ASP187 4.7 34.6 1.0
OE2 K:GLU150 4.7 52.6 1.0
O1B K:ADP401 4.9 50.1 1.0
CG K:GLU150 4.9 31.3 1.0

Calcium binding site 6 out of 6 in 5muw

Go back to Calcium Binding Sites List in 5muw
Calcium binding site 6 out of 6 in the Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Atomic Structure of P4 Packaging Enzyme Fitted Into A Localized Reconstruction of Bacteriophage PHI6 Vertex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ca400

b:50.2
occ:1.00
 OG L:SER133 2.3 30.6 1.0
O2B L:ADP401 2.5 45.1 1.0
CB L:SER133 3.2 29.6 1.0
OE2 L:GLU153 3.5 24.8 1.0
OE1 L:GLU150 3.5 53.5 1.0
O2A L:ADP401 3.5 57.3 1.0
O3B L:ADP401 3.5 39.8 1.0
PB L:ADP401 3.6 44.4 1.0
O3A L:ADP401 4.3 49.4 1.0
CD L:GLU153 4.3 59.1 1.0
OE1 L:GLU153 4.4 65.6 1.0
OD2 L:ASP187 4.4 51.4 1.0
PA L:ADP401 4.4 56.3 1.0
OD1 L:ASP187 4.4 30.4 1.0
CA L:SER133 4.4 29.4 1.0
N L:SER133 4.5 29.1 1.0
CD L:GLU150 4.5 52.9 1.0
NH2 L:ARG147 4.6 48.4 1.0
O1A L:ADP401 4.8 55.5 1.0
O1B L:ADP401 4.8 42.8 1.0
CG L:ASP187 4.9 37.4 1.0

Reference:

Z.Sun, K.El Omari, X.Sun, S.L.Ilca, A.Kotecha, D.I.Stuart, M.M.Poranen, J.T.Huiskonen. Double-Stranded Rna Virus Outer Shell Assembly By Bona Fide Domain-Swapping. Nat Commun V. 8 14814 2017.
ISSN: ESSN 2041-1723
PubMed: 28287099
DOI: 10.1038/NCOMMS14814
Page generated: Wed Jul 9 08:32:58 2025

Last articles

Mg in 4PUQ
Mg in 4PV1
Mg in 4PTN
Mg in 4PU9
Mg in 4PTK
Mg in 4PU5
Mg in 4PQV
Mg in 4PRX
Mg in 4PRQ
Mg in 4PRV
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy