Calcium in PDB 5myi: Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling.

All present enzymatic activity of Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling.:
3.6.1.23;

The structure of Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling., PDB code: 5myi was solved by J.Donderis, J.Bowring, E.Maiques, J.R.Ciges-Tomas, C.Alite, I.Mehmedov, M.A.Tormo-Mas, J.R.Penades, A.Marina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	60.37 / 1.90
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	79.450, 79.450, 125.810, 90.00, 90.00, 120.00
R / Rfree (%)	16.5 / 20.9

The structure of Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling. also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Calcium atom in the Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling. (pdb code 5myi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling., PDB code: 5myi:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling. within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca201 b:25.7 occ:1.00 O D:HOH316 2.3 24.2 1.0 O D:GLN82 2.4 26.1 1.0 O D:GLY83 2.4 27.4 1.0 O D:HOH344 2.4 28.3 1.0 O D:HOH388 2.4 23.1 1.0 C D:GLY83 3.3 29.2 1.0 C D:GLN82 3.4 24.6 1.0 CA D:GLY83 3.6 25.6 1.0 N D:GLY83 3.9 25.0 1.0 O D:HOH386 4.1 36.4 1.0 OD2 D:ASP88 4.1 36.9 1.0 O D:HOH383 4.4 25.6 1.0 O D:HOH302 4.5 36.0 1.0 N D:PHE84 4.6 28.9 1.0 CA D:GLN82 4.6 24.1 1.0 OE2 D:GLU85 4.6 38.5 1.0 CG D:GLU85 4.7 35.7 1.0 CB D:GLN82 4.7 20.3 1.0 OH D:TYR87 4.9 68.1 1.0 CG D:ASP88 4.9 35.9 1.0

Calcium binding site 2 out of 2 in the Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling. within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca202 b:27.3 occ:1.00 OE1 D:GLU67 2.3 34.1 1.0 OE1 D:GLU42 2.3 35.0 0.5 OD2 D:ASP70 2.3 28.2 1.0 OE1 D:GLU39 2.3 32.9 1.0 O D:HOH375 2.3 37.7 1.0 OE1 D:GLU42 2.4 36.4 0.5 O D:HOH322 2.5 21.1 1.0 CG D:ASP70 3.2 31.7 1.0 CD D:GLU42 3.3 34.8 0.5 CD D:GLU42 3.5 33.3 0.5 CD D:GLU67 3.5 38.3 1.0 CD D:GLU39 3.5 31.6 1.0 CB D:ASP70 3.6 27.2 1.0 O D:HOH305 3.8 28.5 1.0 CG D:GLU42 3.9 28.0 0.5 O D:HOH312 3.9 40.9 1.0 CB D:GLU42 3.9 20.5 0.5 O D:HOH329 4.0 62.8 1.0 CB D:GLU42 4.1 22.8 0.5 OE2 D:GLU39 4.2 43.1 1.0 OE2 D:GLU67 4.2 44.6 1.0 OE2 D:GLU42 4.3 38.4 0.5 OD1 D:ASP70 4.3 35.0 1.0 CG D:GLU42 4.3 20.2 0.5 OE2 D:GLU42 4.3 33.2 0.5 CA D:GLU67 4.3 20.2 1.0 O D:GLU67 4.4 22.7 1.0 CB D:GLU67 4.5 21.6 1.0 CG D:GLU67 4.5 25.9 1.0 CB D:GLU39 4.6 19.3 1.0 CG D:GLU39 4.6 22.3 1.0 CA D:GLU39 4.7 21.6 1.0 O D:GLU39 4.8 22.9 1.0 C D:GLU67 4.9 21.4 1.0

J.Donderis, J.Bowring, E.Maiques, J.R.Ciges-Tomas, C.Alite, I.Mehmedov, M.A.Tormo-Mas, J.R.Penades, A.Marina. Convergent Evolution Involving Dimeric and Trimeric Dutpases in Pathogenicity Island Mobilization. Plos Pathog. V. 13 06581 2017.
ISSN: ESSN 1553-7374
PubMed: 28892519
DOI: 10.1371/JOURNAL.PPAT.1006581