Calcium in PDB 5nem: Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A.

The binding sites of Calcium atom in the Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A. (pdb code 5nem). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A., PDB code: 5nem:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca618 b:72.0 occ:1.00 ND2 A:ASN417 2.3 0.8 1.0 OD1 A:ASP415 2.3 88.2 1.0 OD1 A:ASP421 2.4 93.8 1.0 OD1 A:ASN417 2.4 0.3 1.0 O A:TYR419 2.4 0.2 1.0 CG A:ASN417 2.6 0.8 1.0 OD2 A:ASP415 2.9 99.5 1.0 CG A:ASP415 2.9 77.1 1.0 CG A:ASP421 3.1 84.4 1.0 OD2 A:ASP421 3.2 85.6 1.0 C A:TYR419 3.6 92.2 1.0 O A:ALA437 3.6 87.3 1.0 OD1 A:ASP413 3.7 75.5 1.0 N A:ALA437 3.7 91.7 1.0 CB A:ASN417 4.0 97.4 1.0 CB A:ALA437 4.2 68.2 1.0 CB A:TYR419 4.3 97.7 1.0 CA A:TYR419 4.3 73.2 1.0 CA A:ALA437 4.3 90.4 1.0 CB A:ASP415 4.4 78.5 1.0 C A:ALA437 4.4 84.4 1.0 N A:TYR419 4.5 76.1 1.0 CG A:ARG436 4.5 75.1 1.0 CB A:ASP421 4.5 70.8 1.0 C A:PRO420 4.6 79.0 1.0 N A:PRO420 4.6 88.6 1.0 CB A:ARG436 4.6 79.0 1.0 N A:ASN417 4.6 95.2 1.0 O A:PRO420 4.7 83.6 1.0 C A:ARG436 4.7 68.1 1.0 N A:ASP421 4.7 72.2 1.0 CA A:ARG436 4.8 68.0 1.0 N A:ASP415 4.8 76.0 1.0 CA A:ASN417 4.8 94.9 1.0 CA A:PRO420 4.9 86.8 1.0 CG A:ASP413 4.9 91.3 1.0 CD2 A:LEU574 4.9 88.3 1.0 CD A:ARG436 5.0 75.9 1.0 CA A:ASP421 5.0 66.7 1.0

Calcium binding site 2 out of 4 in the Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca619 b:60.1 occ:1.00 O A:PHE355 2.2 63.9 1.0 OD1 A:ASP353 2.3 67.6 1.0 OD1 A:ASP351 2.3 73.0 1.0 OD1 A:ASP357 2.4 97.0 1.0 OD2 A:ASP357 2.4 78.7 1.0 OD1 A:ASP349 2.4 83.5 1.0 CG A:ASP357 2.6 82.9 1.0 C A:PHE355 3.4 73.6 1.0 CG A:ASP351 3.4 79.7 1.0 CG A:ASP353 3.5 83.2 1.0 CG A:ASP349 3.5 83.8 1.0 OD2 A:ASP351 3.8 79.7 1.0 CA A:ASP349 4.1 69.8 1.0 C A:ASN356 4.1 68.3 1.0 CB A:ASP357 4.1 57.3 1.0 N A:LEU350 4.1 75.2 1.0 O A:ASN356 4.2 78.1 1.0 N A:ASP351 4.2 83.5 1.0 OD2 A:ASP353 4.2 86.9 1.0 N A:PHE355 4.2 68.4 1.0 N A:ASP357 4.3 57.8 1.0 ND2 A:ASN377 4.3 87.0 1.0 CA A:PHE355 4.3 78.9 1.0 C A:ASP349 4.3 71.1 1.0 OD2 A:ASP349 4.3 70.5 1.0 N A:ASN356 4.3 67.6 1.0 CB A:ASP349 4.4 80.1 1.0 CA A:ASN356 4.4 68.4 1.0 N A:ASP353 4.5 81.0 1.0 CB A:ASP353 4.5 72.0 1.0 CB A:PHE355 4.5 76.8 1.0 CA A:ASP357 4.6 70.2 1.0 N A:GLY378 4.7 65.6 1.0 O A:GLY378 4.7 66.2 1.0 CB A:ASP351 4.7 84.9 1.0 N A:GLN352 4.7 76.4 1.0 O A:GLY348 4.8 68.1 1.0 CA A:ASP351 4.9 83.1 1.0

Calcium binding site 3 out of 4 in the Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca620 b:60.0 occ:1.00 OD1 A:ASP238 2.4 77.1 1.0 OD1 A:ASN232 2.4 82.5 1.0 OD1 A:ASP234 2.4 71.5 1.0 O A:ILE236 2.5 78.1 1.0 OD2 A:ASP238 2.5 70.2 1.0 OD1 A:ASP230 2.5 65.6 1.0 CG A:ASP238 2.7 70.5 1.0 CG A:ASN232 3.2 81.8 1.0 CG A:ASP234 3.4 72.5 1.0 ND2 A:ASN232 3.5 88.0 1.0 C A:ILE236 3.6 86.4 1.0 CG A:ASP230 3.7 85.4 1.0 OD2 A:ASP234 3.7 73.0 1.0 CB A:ASP238 4.1 72.3 1.0 CB A:ILE236 4.1 82.2 1.0 CA A:ILE236 4.2 89.2 1.0 N A:ILE236 4.2 86.7 1.0 N A:ASP238 4.3 58.7 1.0 N A:ASN232 4.4 75.0 1.0 N A:PHE231 4.4 69.3 1.0 C A:ASP237 4.5 65.8 1.0 CA A:ASP230 4.5 61.4 1.0 OD2 A:ASP230 4.5 87.9 1.0 CA A:ASP238 4.6 60.2 1.0 CB A:ASN232 4.6 67.2 1.0 CB A:ASP230 4.6 64.1 1.0 N A:GLY258 4.6 61.8 1.0 OD2 A:ASP257 4.6 76.2 1.0 N A:ASP237 4.7 86.3 1.0 OD1 A:ASP257 4.7 85.2 1.0 N A:ASP234 4.7 73.2 1.0 CG2 A:ILE236 4.7 74.2 1.0 CB A:ASP234 4.7 75.4 1.0 O A:ASP237 4.8 62.7 1.0 CG A:ASP257 4.8 74.6 1.0 CA A:ASP237 5.0 73.3 1.0 CA A:ASN232 5.0 66.9 1.0

Calcium binding site 4 out of 4 in the Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Localised Reconstruction of Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O Panasia - Pose A. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca621 b:63.3 occ:1.00 O A:TYR290 2.3 94.4 1.0 OD1 A:ASN286 2.3 87.0 1.0 OD1 A:ASP292 2.4 77.5 1.0 OD1 A:ASP288 2.4 0.1 1.0 OD1 A:ASP284 2.4 75.3 1.0 OD2 A:ASP292 2.4 72.9 1.0 CG A:ASP292 2.7 74.3 1.0 CG A:ASP288 3.2 0.8 1.0 OD2 A:ASP288 3.3 0.7 1.0 C A:TYR290 3.4 60.9 1.0 CG A:ASN286 3.4 87.7 1.0 CG A:ASP284 3.6 80.3 1.0 CB A:TYR290 3.7 67.5 1.0 ND2 A:ASN286 3.8 94.9 1.0 CA A:TYR290 3.9 63.6 1.0 N A:TYR290 4.0 72.1 1.0 O A:GLN320 4.2 61.9 1.0 CB A:ASP292 4.2 53.4 1.0 CA A:ASP284 4.3 58.3 1.0 N A:GLN320 4.3 85.5 1.0 N A:ILE285 4.4 78.4 1.0 CB A:ASP284 4.4 72.2 1.0 N A:ASN286 4.4 76.7 1.0 N A:ASP292 4.5 54.6 1.0 N A:ALA291 4.5 64.4 1.0 OD2 A:ASP284 4.6 64.5 1.0 CB A:ASP288 4.6 94.5 1.0 C A:ALA291 4.7 72.2 1.0 C A:ASP284 4.7 93.6 1.0 CB A:ASN286 4.7 75.7 1.0 CA A:ASP292 4.8 65.9 1.0 N A:ASP288 4.9 85.3 1.0 CB A:GLN320 4.9 66.2 1.0 CG A:LEU319 4.9 70.2 1.0 CA A:ALA291 5.0 62.8 1.0 CA A:GLN320 5.0 58.1 1.0 CA A:ASN286 5.0 77.2 1.0 C A:GLN320 5.0 87.3 1.0

A.Kotecha, Q.Wang, X.Dong, S.L.Ilca, M.Ondiviela, R.Zihe, J.Seago, B.Charleston, E.E.Fry, N.G.A.Abrescia, T.A.Springer, J.T.Huiskonen, D.I.Stuart. Rules of Engagement Between Alpha V Beta 6 Integrin and Foot-and-Mouth Disease Virus. Nat Commun V. 8 15408 2017.
ISSN: ESSN 2041-1723
PubMed: 28534487
DOI: 10.1038/NCOMMS15408