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Calcium in PDB 5o5r: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1023

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1023

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1023:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1023, PDB code: 5o5r was solved by L.Motlova, Z.Novakova, C.Barinka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.13 / 1.65
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.512, 130.203, 159.160, 90.00, 90.00, 90.00
R / Rfree (%) 12.4 / 16

Other elements in 5o5r:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1023 also contains other interesting chemical elements:

Fluorine (F) 1 atom
Zinc (Zn) 2 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1023 (pdb code 5o5r). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1023, PDB code: 5o5r:

Calcium binding site 1 out of 1 in 5o5r

Go back to Calcium Binding Sites List in 5o5r
Calcium binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1023


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1023 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca819

b:23.3
occ:1.00
 O A:TYR272 2.3 22.8 1.0
O A:HOH1067 2.4 24.2 1.0
OE2 A:GLU436 2.4 24.6 1.0
O A:THR269 2.4 23.2 1.0
OG1 A:THR269 2.4 24.1 1.0
OE1 A:GLU433 2.5 23.5 1.0
OE2 A:GLU433 2.5 22.5 1.0
CD A:GLU433 2.8 21.9 1.0
C A:THR269 3.3 24.6 1.0
CB A:THR269 3.3 24.5 1.0
C A:TYR272 3.4 23.0 1.0
CD A:GLU436 3.5 25.0 1.0
CA A:THR269 3.9 23.8 1.0
OE1 A:GLU436 3.9 23.6 1.0
N A:TYR272 4.0 23.9 1.0
CA A:PRO273 4.2 25.1 1.0
CB A:ASP266 4.2 24.4 1.0
N A:ALA274 4.2 23.2 1.0
N A:PRO270 4.3 24.8 1.0
N A:PRO273 4.3 24.5 1.0
CG A:GLU433 4.3 23.5 1.0
CA A:TYR272 4.4 24.6 1.0
C A:PRO273 4.4 25.9 1.0
CA A:PRO270 4.5 24.7 1.0
N A:ASP266 4.5 21.9 1.0
O A:ASP266 4.5 24.4 1.0
N A:GLY271 4.5 24.9 1.0
O A:ALA264 4.6 25.9 1.0
N A:THR269 4.6 22.9 1.0
CG2 A:THR269 4.7 23.8 1.0
CG A:GLU436 4.7 22.9 1.0
OD2 A:ASP266 4.7 27.1 1.0
C A:PRO270 4.8 25.6 1.0
CA A:ASP266 4.9 22.8 1.0
CB A:ALA274 4.9 26.5 1.0
CB A:GLU436 4.9 25.5 1.0
C A:GLY271 5.0 26.6 1.0

Reference:

L.Motlova, Z.Novakova, C.Barinka. X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1023 To Be Published.
Page generated: Wed Jul 9 09:14:03 2025

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