Atomistry » Calcium » PDB 5npf-5odc » 5o5t
Atomistry »
  Calcium »
    PDB 5npf-5odc »
      5o5t »

Calcium in PDB 5o5t: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007, PDB code: 5o5t was solved by C.Barinka, Z.Novakova, L.Motlova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.38 / 1.43
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.657, 130.159, 159.160, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 17.3

Other elements in 5o5t:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007 also contains other interesting chemical elements:

Fluorine (F) 1 atom
Zinc (Zn) 2 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007 (pdb code 5o5t). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007, PDB code: 5o5t:

Calcium binding site 1 out of 1 in 5o5t

Go back to Calcium Binding Sites List in 5o5t
Calcium binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca817

b:19.4
occ:1.00
 OE2 A:GLU436 2.3 19.5 1.0
O A:TYR272 2.3 21.9 1.0
O A:HOH933 2.4 19.9 1.0
O A:THR269 2.4 20.8 1.0
OE1 A:GLU433 2.4 19.3 1.0
OG1 A:THR269 2.5 19.4 1.0
OE2 A:GLU433 2.5 20.1 1.0
CD A:GLU433 2.8 21.0 1.0
C A:THR269 3.3 19.0 1.0
CB A:THR269 3.4 19.4 1.0
CD A:GLU436 3.4 23.1 1.0
C A:TYR272 3.4 20.6 1.0
CA A:THR269 3.9 21.4 1.0
OE1 A:GLU436 3.9 19.5 1.0
N A:TYR272 4.0 19.4 1.0
CA A:PRO273 4.2 20.3 1.0
N A:PRO270 4.2 19.1 1.0
CB A:ASP266 4.3 21.0 1.0
N A:ALA274 4.3 20.5 1.0
N A:PRO273 4.3 20.2 1.0
CA A:TYR272 4.3 18.1 1.0
CG A:GLU433 4.4 18.9 1.0
C A:PRO273 4.4 20.2 1.0
N A:GLY271 4.4 19.7 1.0
N A:ASP266 4.5 17.4 1.0
CA A:PRO270 4.5 19.1 1.0
O A:ASP266 4.6 19.1 1.0
O A:ALA264 4.6 21.2 1.0
N A:THR269 4.6 21.2 1.0
CG A:GLU436 4.7 19.3 1.0
CG2 A:THR269 4.7 21.9 1.0
C A:PRO270 4.7 19.8 1.0
OD2 A:ASP266 4.7 20.0 1.0
CA A:ASP266 4.9 20.6 1.0
CB A:ALA274 4.9 22.0 1.0
CB A:GLU436 4.9 18.8 1.0
C A:GLY271 5.0 22.9 1.0

Reference:

C.Barinka, Z.Novakova, L.Motlova. X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007 To Be Published.
Page generated: Wed Jul 9 09:14:12 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy