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Calcium in PDB 5o8l: Crystal Structure of Leuconostoc Citreum Nrrl B-1299 N-Terminally Truncated Dextransucrase Dsr-M in Complex with Sucrose

Enzymatic activity of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 N-Terminally Truncated Dextransucrase Dsr-M in Complex with Sucrose

All present enzymatic activity of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 N-Terminally Truncated Dextransucrase Dsr-M in Complex with Sucrose:
2.4.1.140;

Protein crystallography data

The structure of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 N-Terminally Truncated Dextransucrase Dsr-M in Complex with Sucrose, PDB code: 5o8l was solved by M.Claverie, G.Cioci, M.Remaud-Simeon, C.Moulis, S.Tranier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 3.60
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 183.625, 183.625, 146.804, 90.00, 90.00, 120.00
R / Rfree (%) 19.8 / 22.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 N-Terminally Truncated Dextransucrase Dsr-M in Complex with Sucrose (pdb code 5o8l). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 N-Terminally Truncated Dextransucrase Dsr-M in Complex with Sucrose, PDB code: 5o8l:

Calcium binding site 1 out of 1 in 5o8l

Go back to Calcium Binding Sites List in 5o8l
Calcium binding site 1 out of 1 in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 N-Terminally Truncated Dextransucrase Dsr-M in Complex with Sucrose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 N-Terminally Truncated Dextransucrase Dsr-M in Complex with Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2001

b:73.9
occ:1.00
 OE2 A:GLU627 2.3 0.3 1.0
OD2 A:ASP633 2.3 73.6 1.0
OD1 A:ASP1182 2.3 82.3 1.0
O A:ASN681 2.4 74.7 1.0
O A:GLU627 2.6 78.7 1.0
OD1 A:ASP633 2.7 82.1 1.0
CG A:ASP633 2.8 77.3 1.0
CD A:GLU627 3.3 96.7 1.0
CG A:ASP1182 3.6 80.4 1.0
C A:ASN681 3.7 78.6 1.0
C A:GLU627 3.7 83.1 1.0
CG A:GLU627 3.8 90.6 1.0
O A:ASP1182 3.8 69.2 1.0
O A:VAL634 4.0 74.9 1.0
CB A:ASP633 4.3 73.7 1.0
CA A:GLU627 4.3 87.7 1.0
CG1 A:VAL682 4.3 80.5 1.0
OD2 A:ASP1182 4.3 79.3 1.0
CA A:VAL682 4.4 83.3 1.0
OE1 A:GLU627 4.4 97.5 1.0
N A:VAL682 4.5 81.3 1.0
CA A:ASP1182 4.6 76.8 1.0
C A:ASP1182 4.6 72.0 1.0
CB A:ASP1182 4.6 79.6 1.0
ND2 A:ASN1274 4.6 89.5 1.0
CB A:GLU627 4.6 89.0 1.0
CB A:ASN681 4.7 79.8 1.0
CA A:ASN681 4.7 79.8 1.0
N A:LEU628 4.9 82.8 1.0
CA A:ASP633 4.9 70.0 1.0
CB A:VAL682 4.9 83.3 1.0
ND2 A:ASN636 5.0 77.2 1.0

Reference:

M.Claverie, G.Cioci, M.Vuillemin, N.Monties, P.Roblin, G.Lippens, M.Remaud-Simeon, C.Moulis. Investigations on the Determinants Responsible For Low Molar Mass Dextran Formation By Dsr-M Dextransucrase Acs Catalysis V. 7 7106 2017.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.7B02182
Page generated: Wed Jul 9 09:15:03 2025

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