Calcium in PDB 5ofi: Plla Lectin, Fluorophore Carbohydrate Complex
Protein crystallography data
The structure of Plla Lectin, Fluorophore Carbohydrate Complex, PDB code: 5ofi
was solved by
J.Koehnke,
A.Sikandar,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
45.67 /
2.00
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.564,
134.331,
153.045,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
17.6 /
22.6
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Plla Lectin, Fluorophore Carbohydrate Complex
(pdb code 5ofi). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Plla Lectin, Fluorophore Carbohydrate Complex, PDB code: 5ofi:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 5ofi
Go back to
Calcium Binding Sites List in 5ofi
Calcium binding site 1 out
of 8 in the Plla Lectin, Fluorophore Carbohydrate Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Plla Lectin, Fluorophore Carbohydrate Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca201
b:24.7
occ:1.00
|
O
|
C:TYR38
|
2.3
|
27.8
|
1.0
|
|
O
|
C:THR100
|
2.3
|
26.2
|
1.0
|
|
OD1
|
C:ASN104
|
2.4
|
24.1
|
1.0
|
|
OD2
|
C:ASP96
|
2.4
|
22.9
|
1.0
|
|
OD1
|
C:ASP103
|
2.4
|
26.7
|
1.0
|
|
O13
|
C:9TQ202
|
2.4
|
19.8
|
1.0
|
|
O11
|
C:9TQ202
|
2.4
|
20.5
|
1.0
|
|
C10
|
C:9TQ202
|
3.3
|
21.0
|
1.0
|
|
C12
|
C:9TQ202
|
3.3
|
19.9
|
1.0
|
|
C
|
C:TYR38
|
3.3
|
27.9
|
1.0
|
|
CG
|
C:ASN104
|
3.4
|
23.0
|
1.0
|
|
CG
|
C:ASP103
|
3.4
|
27.4
|
1.0
|
|
CG
|
C:ASP96
|
3.5
|
22.8
|
1.0
|
|
C
|
C:THR100
|
3.5
|
25.6
|
1.0
|
|
OG1
|
C:THR100
|
3.6
|
24.0
|
1.0
|
|
ND2
|
C:ASN104
|
3.7
|
19.3
|
1.0
|
|
OD2
|
C:ASP103
|
3.8
|
25.4
|
1.0
|
|
OD1
|
C:ASP96
|
3.9
|
20.1
|
1.0
|
|
C08
|
C:9TQ202
|
3.9
|
23.2
|
1.0
|
|
CA
|
C:TYR38
|
4.0
|
30.1
|
1.0
|
|
CB
|
C:THR100
|
4.0
|
25.7
|
1.0
|
|
CB
|
C:TYR38
|
4.2
|
24.1
|
1.0
|
|
CA
|
C:THR100
|
4.4
|
28.5
|
1.0
|
|
N
|
C:GLY39
|
4.4
|
26.4
|
1.0
|
|
N
|
C:PHE101
|
4.5
|
26.2
|
1.0
|
|
CA
|
C:PHE101
|
4.6
|
27.5
|
1.0
|
|
N
|
C:ASN104
|
4.6
|
23.2
|
1.0
|
|
O09
|
C:9TQ202
|
4.6
|
27.8
|
1.0
|
|
CA
|
C:GLY39
|
4.7
|
29.2
|
1.0
|
|
C14
|
C:9TQ202
|
4.7
|
24.9
|
1.0
|
|
CB
|
C:ASN104
|
4.7
|
22.9
|
1.0
|
|
C
|
C:ASP103
|
4.7
|
24.7
|
1.0
|
|
CB
|
C:ASP96
|
4.7
|
19.3
|
1.0
|
|
CB
|
C:ASP103
|
4.8
|
27.6
|
1.0
|
|
N
|
C:ASP103
|
4.9
|
24.0
|
1.0
|
|
C
|
C:PHE101
|
4.9
|
32.1
|
1.0
|
|
CD1
|
C:TYR38
|
5.0
|
20.8
|
1.0
|
|
Calcium binding site 2 out
of 8 in 5ofi
Go back to
Calcium Binding Sites List in 5ofi
Calcium binding site 2 out
of 8 in the Plla Lectin, Fluorophore Carbohydrate Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Plla Lectin, Fluorophore Carbohydrate Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:21.4
occ:1.00
|
O11
|
A:9TQ202
|
2.3
|
25.7
|
1.0
|
|
O
|
A:THR100
|
2.3
|
24.4
|
1.0
|
|
OD1
|
A:ASN104
|
2.3
|
27.9
|
1.0
|
|
O
|
A:TYR38
|
2.4
|
20.6
|
1.0
|
|
OD1
|
A:ASP103
|
2.4
|
24.8
|
1.0
|
|
OD2
|
A:ASP96
|
2.5
|
23.5
|
1.0
|
|
O13
|
A:9TQ202
|
2.6
|
23.6
|
1.0
|
|
C10
|
A:9TQ202
|
3.2
|
25.0
|
1.0
|
|
C12
|
A:9TQ202
|
3.3
|
25.8
|
1.0
|
|
CG
|
A:ASN104
|
3.3
|
23.6
|
1.0
|
|
C
|
A:TYR38
|
3.4
|
26.1
|
1.0
|
|
CG
|
A:ASP103
|
3.4
|
30.5
|
1.0
|
|
C
|
A:THR100
|
3.5
|
25.7
|
1.0
|
|
CG
|
A:ASP96
|
3.5
|
25.0
|
1.0
|
|
OG1
|
A:THR100
|
3.6
|
27.4
|
1.0
|
|
ND2
|
A:ASN104
|
3.7
|
27.4
|
1.0
|
|
OD2
|
A:ASP103
|
3.7
|
27.4
|
1.0
|
|
CB
|
A:THR100
|
3.9
|
32.2
|
1.0
|
|
OD1
|
A:ASP96
|
3.9
|
23.0
|
1.0
|
|
C08
|
A:9TQ202
|
3.9
|
24.1
|
1.0
|
|
CA
|
A:TYR38
|
4.1
|
27.5
|
1.0
|
|
CB
|
A:TYR38
|
4.3
|
20.6
|
1.0
|
|
CA
|
A:THR100
|
4.3
|
26.3
|
1.0
|
|
N
|
A:GLY39
|
4.4
|
26.1
|
1.0
|
|
N
|
A:PHE101
|
4.5
|
24.3
|
1.0
|
|
CA
|
A:PHE101
|
4.6
|
33.0
|
1.0
|
|
N
|
A:ASN104
|
4.6
|
27.0
|
1.0
|
|
O09
|
A:9TQ202
|
4.6
|
26.9
|
1.0
|
|
CA
|
A:GLY39
|
4.7
|
29.0
|
1.0
|
|
CB
|
A:ASN104
|
4.7
|
23.5
|
1.0
|
|
C
|
A:ASP103
|
4.7
|
28.1
|
1.0
|
|
C14
|
A:9TQ202
|
4.7
|
26.7
|
1.0
|
|
CB
|
A:ASP103
|
4.8
|
30.2
|
1.0
|
|
CB
|
A:ASP96
|
4.8
|
22.2
|
1.0
|
|
N
|
A:ASP103
|
4.9
|
24.6
|
1.0
|
|
C
|
A:PHE101
|
5.0
|
35.4
|
1.0
|
|
CD1
|
A:TYR38
|
5.0
|
20.7
|
1.0
|
|
Calcium binding site 3 out
of 8 in 5ofi
Go back to
Calcium Binding Sites List in 5ofi
Calcium binding site 3 out
of 8 in the Plla Lectin, Fluorophore Carbohydrate Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Plla Lectin, Fluorophore Carbohydrate Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca201
b:21.4
occ:1.00
|
O
|
B:THR100
|
2.3
|
22.0
|
1.0
|
|
OD1
|
B:ASP103
|
2.3
|
24.5
|
1.0
|
|
O
|
B:TYR38
|
2.4
|
24.0
|
1.0
|
|
OD1
|
B:ASN104
|
2.4
|
19.4
|
1.0
|
|
OD2
|
B:ASP96
|
2.4
|
16.7
|
1.0
|
|
O13
|
B:9TQ202
|
2.5
|
24.0
|
1.0
|
|
O11
|
B:9TQ202
|
2.5
|
23.1
|
1.0
|
|
CG
|
B:ASP103
|
3.3
|
24.4
|
1.0
|
|
C12
|
B:9TQ202
|
3.4
|
25.4
|
1.0
|
|
OG1
|
B:THR100
|
3.4
|
22.9
|
1.0
|
|
C10
|
B:9TQ202
|
3.4
|
22.1
|
1.0
|
|
CG
|
B:ASN104
|
3.4
|
20.4
|
1.0
|
|
C
|
B:TYR38
|
3.4
|
27.8
|
1.0
|
|
C
|
B:THR100
|
3.5
|
24.6
|
1.0
|
|
CG
|
B:ASP96
|
3.5
|
22.1
|
1.0
|
|
OD2
|
B:ASP103
|
3.6
|
21.5
|
1.0
|
|
ND2
|
B:ASN104
|
3.8
|
22.6
|
1.0
|
|
CB
|
B:THR100
|
3.8
|
29.7
|
1.0
|
|
OD1
|
B:ASP96
|
4.0
|
18.1
|
1.0
|
|
C08
|
B:9TQ202
|
4.0
|
27.8
|
1.0
|
|
CA
|
B:TYR38
|
4.0
|
22.1
|
1.0
|
|
CA
|
B:THR100
|
4.3
|
24.5
|
1.0
|
|
CB
|
B:TYR38
|
4.3
|
21.8
|
1.0
|
|
N
|
B:GLY39
|
4.4
|
25.1
|
1.0
|
|
N
|
B:PHE101
|
4.5
|
17.1
|
1.0
|
|
N
|
B:ASN104
|
4.5
|
21.5
|
1.0
|
|
CA
|
B:PHE101
|
4.6
|
24.2
|
1.0
|
|
C
|
B:ASP103
|
4.6
|
28.2
|
1.0
|
|
CB
|
B:ASP103
|
4.7
|
17.1
|
1.0
|
|
CA
|
B:GLY39
|
4.7
|
25.5
|
1.0
|
|
CB
|
B:ASN104
|
4.7
|
19.1
|
1.0
|
|
O09
|
B:9TQ202
|
4.7
|
23.5
|
1.0
|
|
CB
|
B:ASP96
|
4.8
|
20.6
|
1.0
|
|
C14
|
B:9TQ202
|
4.8
|
28.0
|
1.0
|
|
N
|
B:ASP103
|
4.8
|
20.3
|
1.0
|
|
CA
|
B:ASN104
|
4.9
|
23.1
|
1.0
|
|
C
|
B:PHE101
|
4.9
|
26.2
|
1.0
|
|
CA
|
B:ASP103
|
4.9
|
21.8
|
1.0
|
|
O
|
B:ASP103
|
5.0
|
24.6
|
1.0
|
|
Calcium binding site 4 out
of 8 in 5ofi
Go back to
Calcium Binding Sites List in 5ofi
Calcium binding site 4 out
of 8 in the Plla Lectin, Fluorophore Carbohydrate Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Plla Lectin, Fluorophore Carbohydrate Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca201
b:20.1
occ:1.00
|
O
|
D:TYR38
|
2.3
|
20.7
|
1.0
|
|
O
|
D:THR100
|
2.4
|
20.7
|
1.0
|
|
OD1
|
D:ASP103
|
2.4
|
27.4
|
1.0
|
|
OD2
|
D:ASP96
|
2.4
|
21.4
|
1.0
|
|
OD1
|
D:ASN104
|
2.4
|
19.7
|
1.0
|
|
O13
|
D:9TQ202
|
2.4
|
24.4
|
1.0
|
|
O11
|
D:9TQ202
|
2.5
|
22.7
|
1.0
|
|
C12
|
D:9TQ202
|
3.3
|
21.4
|
1.0
|
|
C10
|
D:9TQ202
|
3.3
|
23.4
|
1.0
|
|
CG
|
D:ASP103
|
3.4
|
25.0
|
1.0
|
|
C
|
D:TYR38
|
3.4
|
22.3
|
1.0
|
|
CG
|
D:ASN104
|
3.5
|
23.4
|
1.0
|
|
CG
|
D:ASP96
|
3.5
|
20.4
|
1.0
|
|
OG1
|
D:THR100
|
3.5
|
20.5
|
1.0
|
|
C
|
D:THR100
|
3.5
|
25.6
|
1.0
|
|
OD2
|
D:ASP103
|
3.6
|
26.6
|
1.0
|
|
CB
|
D:THR100
|
3.8
|
25.2
|
1.0
|
|
ND2
|
D:ASN104
|
3.9
|
20.5
|
1.0
|
|
OD1
|
D:ASP96
|
3.9
|
20.0
|
1.0
|
|
CA
|
D:TYR38
|
4.0
|
23.1
|
1.0
|
|
C08
|
D:9TQ202
|
4.0
|
22.4
|
1.0
|
|
CA
|
D:THR100
|
4.3
|
24.8
|
1.0
|
|
CB
|
D:TYR38
|
4.3
|
26.9
|
1.0
|
|
N
|
D:GLY39
|
4.4
|
24.7
|
1.0
|
|
N
|
D:PHE101
|
4.5
|
20.4
|
1.0
|
|
O
|
D:HOH378
|
4.6
|
47.2
|
1.0
|
|
N
|
D:ASN104
|
4.6
|
23.4
|
1.0
|
|
CA
|
D:PHE101
|
4.7
|
20.2
|
1.0
|
|
CA
|
D:GLY39
|
4.7
|
24.6
|
1.0
|
|
C14
|
D:9TQ202
|
4.7
|
22.2
|
1.0
|
|
CB
|
D:ASP96
|
4.7
|
22.5
|
1.0
|
|
C
|
D:ASP103
|
4.7
|
22.6
|
1.0
|
|
CB
|
D:ASP103
|
4.7
|
24.4
|
1.0
|
|
O09
|
D:9TQ202
|
4.8
|
16.9
|
1.0
|
|
CB
|
D:ASN104
|
4.8
|
20.6
|
1.0
|
|
CD1
|
D:TYR38
|
4.9
|
29.3
|
1.0
|
|
N
|
D:ASP103
|
4.9
|
20.6
|
1.0
|
|
CA
|
D:ASN104
|
5.0
|
23.0
|
1.0
|
|
Calcium binding site 5 out
of 8 in 5ofi
Go back to
Calcium Binding Sites List in 5ofi
Calcium binding site 5 out
of 8 in the Plla Lectin, Fluorophore Carbohydrate Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Plla Lectin, Fluorophore Carbohydrate Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca201
b:29.1
occ:1.00
|
O
|
E:THR100
|
2.3
|
29.8
|
1.0
|
|
O
|
E:TYR38
|
2.3
|
43.3
|
1.0
|
|
OD1
|
E:ASP103
|
2.4
|
32.5
|
1.0
|
|
OD2
|
E:ASP96
|
2.4
|
28.4
|
1.0
|
|
OD1
|
E:ASN104
|
2.4
|
29.9
|
1.0
|
|
CG
|
E:ASP103
|
3.3
|
33.2
|
1.0
|
|
CG
|
E:ASN104
|
3.3
|
27.8
|
1.0
|
|
CG
|
E:ASP96
|
3.4
|
30.6
|
1.0
|
|
C
|
E:TYR38
|
3.4
|
39.1
|
1.0
|
|
OD2
|
E:ASP103
|
3.4
|
35.9
|
1.0
|
|
OG1
|
E:THR100
|
3.5
|
31.7
|
1.0
|
|
C
|
E:THR100
|
3.5
|
33.7
|
1.0
|
|
ND2
|
E:ASN104
|
3.6
|
32.2
|
1.0
|
|
OD1
|
E:ASP96
|
3.8
|
32.5
|
1.0
|
|
CB
|
E:THR100
|
3.9
|
45.1
|
1.0
|
|
CA
|
E:TYR38
|
4.0
|
34.5
|
1.0
|
|
CB
|
E:TYR38
|
4.2
|
34.8
|
1.0
|
|
CA
|
E:THR100
|
4.3
|
44.7
|
1.0
|
|
N
|
E:GLY39
|
4.4
|
32.3
|
1.0
|
|
N
|
E:PHE101
|
4.5
|
37.4
|
1.0
|
|
CA
|
E:PHE101
|
4.6
|
38.1
|
1.0
|
|
CB
|
E:ASP103
|
4.7
|
36.0
|
1.0
|
|
N
|
E:ASN104
|
4.7
|
33.4
|
1.0
|
|
CB
|
E:ASP96
|
4.7
|
30.7
|
1.0
|
|
CB
|
E:ASN104
|
4.7
|
28.3
|
1.0
|
|
CA
|
E:GLY39
|
4.7
|
38.3
|
1.0
|
|
C
|
E:ASP103
|
4.8
|
34.0
|
1.0
|
|
CD1
|
E:TYR38
|
4.9
|
29.8
|
1.0
|
|
N
|
E:ASP103
|
5.0
|
34.8
|
1.0
|
|
Calcium binding site 6 out
of 8 in 5ofi
Go back to
Calcium Binding Sites List in 5ofi
Calcium binding site 6 out
of 8 in the Plla Lectin, Fluorophore Carbohydrate Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Plla Lectin, Fluorophore Carbohydrate Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca201
b:24.3
occ:1.00
|
O
|
F:THR100
|
2.3
|
34.1
|
1.0
|
|
O
|
F:TYR38
|
2.4
|
31.8
|
1.0
|
|
OD1
|
F:ASP103
|
2.4
|
27.4
|
1.0
|
|
OD1
|
F:ASN104
|
2.4
|
34.7
|
1.0
|
|
OD2
|
F:ASP96
|
2.5
|
24.1
|
1.0
|
|
C
|
F:TYR38
|
3.4
|
34.1
|
1.0
|
|
CG
|
F:ASN104
|
3.5
|
42.8
|
1.0
|
|
CG
|
F:ASP103
|
3.5
|
28.7
|
1.0
|
|
C
|
F:THR100
|
3.5
|
29.1
|
1.0
|
|
CG
|
F:ASP96
|
3.5
|
25.9
|
1.0
|
|
OG1
|
F:THR100
|
3.6
|
25.5
|
1.0
|
|
OD2
|
F:ASP103
|
3.8
|
31.1
|
1.0
|
|
ND2
|
F:ASN104
|
3.8
|
46.4
|
1.0
|
|
OD1
|
F:ASP96
|
3.9
|
24.1
|
1.0
|
|
CB
|
F:THR100
|
3.9
|
27.3
|
1.0
|
|
CA
|
F:TYR38
|
4.1
|
30.3
|
1.0
|
|
CB
|
F:TYR38
|
4.3
|
31.8
|
1.0
|
|
CA
|
F:THR100
|
4.3
|
29.6
|
1.0
|
|
N
|
F:GLY39
|
4.4
|
30.1
|
1.0
|
|
N
|
F:PHE101
|
4.4
|
37.9
|
1.0
|
|
CA
|
F:PHE101
|
4.5
|
35.6
|
1.0
|
|
N
|
F:ASN104
|
4.6
|
39.1
|
1.0
|
|
CA
|
F:GLY39
|
4.7
|
35.7
|
1.0
|
|
C
|
F:ASP103
|
4.7
|
38.2
|
1.0
|
|
CB
|
F:ASN104
|
4.8
|
44.6
|
1.0
|
|
CB
|
F:ASP103
|
4.8
|
30.1
|
1.0
|
|
CB
|
F:ASP96
|
4.8
|
23.0
|
1.0
|
|
N
|
F:ASP103
|
4.8
|
30.4
|
1.0
|
|
C
|
F:PHE101
|
4.9
|
27.1
|
1.0
|
|
CD1
|
F:TYR38
|
5.0
|
28.9
|
1.0
|
|
O
|
F:ASP103
|
5.0
|
30.8
|
1.0
|
|
CA
|
F:ASP103
|
5.0
|
28.7
|
1.0
|
|
Calcium binding site 7 out
of 8 in 5ofi
Go back to
Calcium Binding Sites List in 5ofi
Calcium binding site 7 out
of 8 in the Plla Lectin, Fluorophore Carbohydrate Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Plla Lectin, Fluorophore Carbohydrate Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca201
b:33.0
occ:1.00
|
O
|
G:THR100
|
2.3
|
31.7
|
1.0
|
|
O
|
G:TYR38
|
2.3
|
37.5
|
1.0
|
|
OD1
|
G:ASN104
|
2.4
|
26.8
|
1.0
|
|
OD1
|
G:ASP103
|
2.4
|
38.2
|
1.0
|
|
OD2
|
G:ASP96
|
2.5
|
33.3
|
1.0
|
|
C
|
G:TYR38
|
3.4
|
36.7
|
1.0
|
|
CG
|
G:ASN104
|
3.4
|
26.1
|
1.0
|
|
CG
|
G:ASP103
|
3.4
|
36.3
|
1.0
|
|
C
|
G:THR100
|
3.4
|
34.4
|
1.0
|
|
CG
|
G:ASP96
|
3.4
|
32.6
|
1.0
|
|
OG1
|
G:THR100
|
3.7
|
31.9
|
1.0
|
|
OD2
|
G:ASP103
|
3.7
|
34.2
|
1.0
|
|
ND2
|
G:ASN104
|
3.7
|
28.6
|
1.0
|
|
OD1
|
G:ASP96
|
3.8
|
35.3
|
1.0
|
|
CB
|
G:THR100
|
3.9
|
41.9
|
1.0
|
|
CA
|
G:TYR38
|
4.0
|
34.3
|
1.0
|
|
CB
|
G:TYR38
|
4.2
|
31.6
|
1.0
|
|
CA
|
G:THR100
|
4.2
|
41.9
|
1.0
|
|
N
|
G:PHE101
|
4.3
|
30.4
|
1.0
|
|
N
|
G:GLY39
|
4.4
|
34.4
|
1.0
|
|
CA
|
G:PHE101
|
4.4
|
33.4
|
1.0
|
|
N
|
G:ASN104
|
4.6
|
31.7
|
1.0
|
|
C
|
G:ASP103
|
4.7
|
33.8
|
1.0
|
|
CA
|
G:GLY39
|
4.7
|
37.5
|
1.0
|
|
CB
|
G:ASP103
|
4.7
|
36.7
|
1.0
|
|
CB
|
G:ASP96
|
4.7
|
33.3
|
1.0
|
|
CB
|
G:ASN104
|
4.7
|
34.4
|
1.0
|
|
N
|
G:ASP103
|
4.8
|
34.4
|
1.0
|
|
C
|
G:PHE101
|
4.8
|
34.5
|
1.0
|
|
CA
|
G:ASP103
|
5.0
|
36.9
|
1.0
|
|
CA
|
G:ASN104
|
5.0
|
27.1
|
1.0
|
|
Calcium binding site 8 out
of 8 in 5ofi
Go back to
Calcium Binding Sites List in 5ofi
Calcium binding site 8 out
of 8 in the Plla Lectin, Fluorophore Carbohydrate Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Plla Lectin, Fluorophore Carbohydrate Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca201
b:44.8
occ:1.00
|
OD1
|
H:ASN104
|
2.3
|
42.3
|
1.0
|
|
O
|
H:THR100
|
2.3
|
62.8
|
1.0
|
|
OD1
|
H:ASP103
|
2.3
|
49.8
|
1.0
|
|
O
|
H:TYR38
|
2.4
|
40.0
|
1.0
|
|
OD2
|
H:ASP96
|
2.6
|
47.4
|
1.0
|
|
CG2
|
H:THR100
|
2.9
|
54.4
|
1.0
|
|
CG
|
H:ASP103
|
3.2
|
48.0
|
1.0
|
|
C
|
H:TYR38
|
3.2
|
39.7
|
1.0
|
|
CG
|
H:ASN104
|
3.3
|
43.1
|
1.0
|
|
C
|
H:THR100
|
3.5
|
61.3
|
1.0
|
|
OD2
|
H:ASP103
|
3.5
|
48.0
|
1.0
|
|
CG
|
H:ASP96
|
3.6
|
40.6
|
1.0
|
|
ND2
|
H:ASN104
|
3.7
|
41.1
|
1.0
|
|
CA
|
H:TYR38
|
3.8
|
37.2
|
1.0
|
|
OD1
|
H:ASP96
|
3.9
|
46.9
|
1.0
|
|
CB
|
H:TYR38
|
4.0
|
40.2
|
1.0
|
|
CB
|
H:THR100
|
4.0
|
57.0
|
1.0
|
|
N
|
H:GLY39
|
4.2
|
47.1
|
1.0
|
|
CA
|
H:THR100
|
4.2
|
59.0
|
1.0
|
|
O
|
H:HOH310
|
4.4
|
31.1
|
1.0
|
|
N
|
H:PHE101
|
4.5
|
61.4
|
1.0
|
|
C
|
H:ASP103
|
4.5
|
45.1
|
1.0
|
|
N
|
H:ASN104
|
4.5
|
40.3
|
1.0
|
|
CA
|
H:GLY39
|
4.6
|
49.7
|
1.0
|
|
CB
|
H:ASP103
|
4.6
|
47.9
|
1.0
|
|
CB
|
H:ASN104
|
4.7
|
43.3
|
1.0
|
|
CA
|
H:PHE101
|
4.7
|
54.3
|
1.0
|
|
O
|
H:ASP103
|
4.8
|
46.0
|
1.0
|
|
CD1
|
H:TYR38
|
4.8
|
39.4
|
1.0
|
|
N
|
H:ASP103
|
4.9
|
71.1
|
1.0
|
|
CA
|
H:ASN104
|
4.9
|
38.2
|
1.0
|
|
CA
|
H:ASP103
|
4.9
|
71.8
|
1.0
|
|
CB
|
H:ASP96
|
4.9
|
37.0
|
1.0
|
|
CG
|
H:TYR38
|
5.0
|
39.7
|
1.0
|
|
Reference:
G.Beshr,
A.Sikandar,
E.M.Jemiller,
N.Klymiuk,
D.Hauck,
S.Wagner,
E.Wolf,
J.Koehnke,
A.Titz.
Photorhabdus Luminescens Lectin A (Plla): A New Probe For Detecting Alpha-Galactoside-Terminating Glycoconjugates. J. Biol. Chem. V. 292 19935 2017.
ISSN: ESSN 1083-351X
PubMed: 28972138
DOI: 10.1074/JBC.M117.812792
Page generated: Wed Jul 9 09:16:29 2025
|
