Calcium in PDB 5ofx: Plla Lectin, Trisaccharide Complex
Protein crystallography data
The structure of Plla Lectin, Trisaccharide Complex, PDB code: 5ofx
was solved by
J.Koehnke,
A.Sikandar,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
44.09 /
1.75
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
58.979,
62.998,
75.860,
101.15,
112.79,
94.44
|
|
R / Rfree (%)
|
17.5 /
20.6
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Plla Lectin, Trisaccharide Complex
(pdb code 5ofx). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Plla Lectin, Trisaccharide Complex, PDB code: 5ofx:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 5ofx
Go back to
Calcium Binding Sites List in 5ofx
Calcium binding site 1 out
of 8 in the Plla Lectin, Trisaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Plla Lectin, Trisaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:10.7
occ:1.00
|
O
|
A:THR100
|
2.3
|
10.8
|
1.0
|
|
O
|
A:TYR38
|
2.3
|
10.1
|
1.0
|
|
OD2
|
A:ASP96
|
2.4
|
8.8
|
1.0
|
|
OD1
|
A:ASN104
|
2.4
|
9.7
|
1.0
|
|
OD1
|
A:ASP103
|
2.4
|
11.8
|
1.0
|
|
O3X
|
A:RAF201
|
2.4
|
11.9
|
1.0
|
|
O4X
|
A:RAF201
|
2.5
|
8.9
|
1.0
|
|
C
|
A:TYR38
|
3.3
|
9.9
|
1.0
|
|
C3X
|
A:RAF201
|
3.4
|
10.8
|
1.0
|
|
CG
|
A:ASP96
|
3.4
|
8.6
|
1.0
|
|
C4X
|
A:RAF201
|
3.4
|
10.1
|
1.0
|
|
CG
|
A:ASN104
|
3.4
|
9.7
|
1.0
|
|
C
|
A:THR100
|
3.4
|
10.4
|
1.0
|
|
CG
|
A:ASP103
|
3.5
|
14.0
|
1.0
|
|
OG1
|
A:THR100
|
3.5
|
10.8
|
1.0
|
|
CB
|
A:THR100
|
3.7
|
11.8
|
1.0
|
|
OD1
|
A:ASP96
|
3.8
|
8.5
|
1.0
|
|
OD2
|
A:ASP103
|
3.8
|
13.1
|
1.0
|
|
ND2
|
A:ASN104
|
3.8
|
9.6
|
1.0
|
|
CA
|
A:TYR38
|
4.0
|
10.8
|
1.0
|
|
C2X
|
A:RAF201
|
4.0
|
14.9
|
1.0
|
|
CA
|
A:THR100
|
4.2
|
12.6
|
1.0
|
|
CB
|
A:TYR38
|
4.2
|
7.8
|
1.0
|
|
N
|
A:GLY39
|
4.4
|
10.7
|
1.0
|
|
N
|
A:PHE101
|
4.4
|
11.6
|
1.0
|
|
CA
|
A:PHE101
|
4.6
|
10.3
|
1.0
|
|
C
|
A:ASP103
|
4.7
|
13.9
|
1.0
|
|
N
|
A:ASN104
|
4.7
|
10.6
|
1.0
|
|
CA
|
A:GLY39
|
4.7
|
11.5
|
1.0
|
|
CB
|
A:ASP96
|
4.7
|
8.6
|
1.0
|
|
O2X
|
A:RAF201
|
4.7
|
10.5
|
1.0
|
|
CB
|
A:ASN104
|
4.8
|
13.0
|
1.0
|
|
CB
|
A:ASP103
|
4.8
|
14.8
|
1.0
|
|
C5X
|
A:RAF201
|
4.8
|
9.6
|
1.0
|
|
N
|
A:ASP103
|
4.9
|
14.7
|
1.0
|
|
O
|
A:ASP103
|
4.9
|
11.3
|
1.0
|
|
O
|
B:HOH376
|
5.0
|
27.3
|
1.0
|
|
CA
|
A:ASN104
|
5.0
|
14.3
|
1.0
|
|
Calcium binding site 2 out
of 8 in 5ofx
Go back to
Calcium Binding Sites List in 5ofx
Calcium binding site 2 out
of 8 in the Plla Lectin, Trisaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Plla Lectin, Trisaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca202
b:9.4
occ:1.00
|
O
|
B:THR100
|
2.3
|
9.5
|
1.0
|
|
O
|
B:TYR38
|
2.3
|
9.8
|
1.0
|
|
OD2
|
B:ASP96
|
2.4
|
9.3
|
1.0
|
|
OD1
|
B:ASN104
|
2.4
|
11.4
|
1.0
|
|
OD1
|
B:ASP103
|
2.4
|
10.7
|
1.0
|
|
O3X
|
B:RAF201
|
2.4
|
10.6
|
1.0
|
|
O4X
|
B:RAF201
|
2.5
|
10.4
|
1.0
|
|
C3X
|
B:RAF201
|
3.4
|
9.6
|
1.0
|
|
C4X
|
B:RAF201
|
3.4
|
9.2
|
1.0
|
|
CG
|
B:ASP103
|
3.4
|
11.2
|
1.0
|
|
CG
|
B:ASN104
|
3.4
|
9.8
|
1.0
|
|
C
|
B:TYR38
|
3.4
|
10.5
|
1.0
|
|
CG
|
B:ASP96
|
3.4
|
9.9
|
1.0
|
|
OG1
|
B:THR100
|
3.5
|
9.2
|
1.0
|
|
C
|
B:THR100
|
3.5
|
9.6
|
1.0
|
|
OD2
|
B:ASP103
|
3.7
|
11.7
|
1.0
|
|
CB
|
B:THR100
|
3.8
|
11.2
|
1.0
|
|
ND2
|
B:ASN104
|
3.8
|
10.7
|
1.0
|
|
OD1
|
B:ASP96
|
3.9
|
10.8
|
1.0
|
|
C2X
|
B:RAF201
|
4.0
|
9.8
|
1.0
|
|
CA
|
B:TYR38
|
4.1
|
11.1
|
1.0
|
|
CA
|
B:THR100
|
4.3
|
10.6
|
1.0
|
|
CB
|
B:TYR38
|
4.3
|
9.5
|
1.0
|
|
N
|
B:GLY39
|
4.5
|
10.6
|
1.0
|
|
N
|
B:PHE101
|
4.5
|
12.7
|
1.0
|
|
CA
|
B:PHE101
|
4.6
|
15.1
|
1.0
|
|
N
|
B:ASN104
|
4.6
|
14.0
|
1.0
|
|
C
|
B:ASP103
|
4.6
|
10.6
|
1.0
|
|
CB
|
B:ASP103
|
4.7
|
11.7
|
1.0
|
|
CB
|
B:ASP96
|
4.7
|
10.6
|
1.0
|
|
CB
|
B:ASN104
|
4.7
|
9.8
|
1.0
|
|
CA
|
B:GLY39
|
4.7
|
11.8
|
1.0
|
|
O2X
|
B:RAF201
|
4.7
|
11.1
|
1.0
|
|
C5X
|
B:RAF201
|
4.8
|
10.1
|
1.0
|
|
N
|
B:ASP103
|
4.8
|
12.3
|
1.0
|
|
O
|
B:ASP103
|
4.9
|
10.6
|
1.0
|
|
CD1
|
B:TYR38
|
4.9
|
9.2
|
1.0
|
|
CA
|
B:ASN104
|
5.0
|
11.2
|
1.0
|
|
CA
|
B:ASP103
|
5.0
|
10.0
|
1.0
|
|
Calcium binding site 3 out
of 8 in 5ofx
Go back to
Calcium Binding Sites List in 5ofx
Calcium binding site 3 out
of 8 in the Plla Lectin, Trisaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Plla Lectin, Trisaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca202
b:14.0
occ:1.00
|
O
|
C:TYR38
|
2.3
|
15.8
|
1.0
|
|
O
|
C:THR100
|
2.4
|
16.5
|
1.0
|
|
OD2
|
C:ASP96
|
2.4
|
13.2
|
1.0
|
|
OD1
|
C:ASN104
|
2.4
|
14.0
|
1.0
|
|
OD1
|
C:ASP103
|
2.4
|
15.8
|
1.0
|
|
O4X
|
C:RAF201
|
2.4
|
16.5
|
1.0
|
|
O3X
|
C:RAF201
|
2.5
|
16.6
|
1.0
|
|
C4X
|
C:RAF201
|
3.3
|
16.7
|
1.0
|
|
C3X
|
C:RAF201
|
3.4
|
17.6
|
1.0
|
|
C
|
C:TYR38
|
3.4
|
13.9
|
1.0
|
|
CG
|
C:ASP96
|
3.4
|
17.3
|
1.0
|
|
CG
|
C:ASN104
|
3.5
|
13.8
|
1.0
|
|
CG
|
C:ASP103
|
3.5
|
16.5
|
1.0
|
|
C
|
C:THR100
|
3.5
|
20.8
|
1.0
|
|
OG1
|
C:THR100
|
3.6
|
17.2
|
1.0
|
|
OD2
|
C:ASP103
|
3.8
|
17.5
|
1.0
|
|
ND2
|
C:ASN104
|
3.8
|
14.7
|
1.0
|
|
OD1
|
C:ASP96
|
3.8
|
13.7
|
1.0
|
|
CB
|
C:THR100
|
3.9
|
17.7
|
1.0
|
|
C2X
|
C:RAF201
|
4.0
|
18.7
|
1.0
|
|
CA
|
C:TYR38
|
4.0
|
14.8
|
1.0
|
|
CB
|
C:TYR38
|
4.2
|
13.1
|
1.0
|
|
CA
|
C:THR100
|
4.3
|
20.9
|
1.0
|
|
N
|
C:GLY39
|
4.4
|
13.9
|
1.0
|
|
N
|
C:PHE101
|
4.5
|
15.8
|
1.0
|
|
CA
|
C:PHE101
|
4.5
|
15.2
|
1.0
|
|
CA
|
C:GLY39
|
4.7
|
14.9
|
1.0
|
|
C
|
C:ASP103
|
4.7
|
14.8
|
1.0
|
|
CB
|
C:ASP96
|
4.7
|
15.0
|
1.0
|
|
N
|
C:ASN104
|
4.7
|
14.2
|
1.0
|
|
O2X
|
C:RAF201
|
4.7
|
18.1
|
1.0
|
|
C5X
|
C:RAF201
|
4.7
|
19.1
|
1.0
|
|
CB
|
C:ASP103
|
4.8
|
15.9
|
1.0
|
|
CB
|
C:ASN104
|
4.8
|
13.6
|
1.0
|
|
N
|
C:ASP103
|
4.9
|
15.9
|
1.0
|
|
C
|
C:PHE101
|
4.9
|
15.1
|
1.0
|
|
CD1
|
C:TYR38
|
4.9
|
13.5
|
1.0
|
|
O
|
C:ASP103
|
5.0
|
14.6
|
1.0
|
|
Calcium binding site 4 out
of 8 in 5ofx
Go back to
Calcium Binding Sites List in 5ofx
Calcium binding site 4 out
of 8 in the Plla Lectin, Trisaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Plla Lectin, Trisaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca202
b:15.7
occ:1.00
|
O
|
D:TYR38
|
2.3
|
18.8
|
1.0
|
|
OD2
|
D:ASP96
|
2.4
|
15.2
|
1.0
|
|
O
|
D:THR100
|
2.4
|
22.1
|
1.0
|
|
OD1
|
D:ASN104
|
2.4
|
17.5
|
1.0
|
|
OD1
|
D:ASP103
|
2.5
|
19.1
|
1.0
|
|
O3X
|
D:RAF201
|
2.5
|
18.4
|
1.0
|
|
O4X
|
D:RAF201
|
2.5
|
12.5
|
1.0
|
|
C
|
D:TYR38
|
3.3
|
23.2
|
1.0
|
|
C3X
|
D:RAF201
|
3.4
|
18.5
|
1.0
|
|
C4X
|
D:RAF201
|
3.4
|
18.9
|
1.0
|
|
CG
|
D:ASP96
|
3.4
|
15.3
|
1.0
|
|
CG
|
D:ASN104
|
3.4
|
21.1
|
1.0
|
|
CG
|
D:ASP103
|
3.5
|
29.4
|
1.0
|
|
C
|
D:THR100
|
3.6
|
23.8
|
1.0
|
|
OG1
|
D:THR100
|
3.7
|
18.8
|
1.0
|
|
OD1
|
D:ASP96
|
3.8
|
16.8
|
1.0
|
|
ND2
|
D:ASN104
|
3.8
|
21.1
|
1.0
|
|
OD2
|
D:ASP103
|
3.8
|
19.1
|
1.0
|
|
CA
|
D:TYR38
|
4.0
|
20.6
|
1.0
|
|
C2X
|
D:RAF201
|
4.0
|
13.7
|
1.0
|
|
CB
|
D:THR100
|
4.0
|
21.8
|
1.0
|
|
CB
|
D:TYR38
|
4.2
|
14.6
|
1.0
|
|
N
|
D:GLY39
|
4.4
|
19.5
|
1.0
|
|
CA
|
D:THR100
|
4.4
|
18.8
|
1.0
|
|
N
|
D:PHE101
|
4.5
|
20.0
|
1.0
|
|
CA
|
D:PHE101
|
4.5
|
18.2
|
1.0
|
|
N
|
D:ASN104
|
4.7
|
22.2
|
1.0
|
|
C
|
D:ASP103
|
4.7
|
23.7
|
1.0
|
|
CA
|
D:GLY39
|
4.7
|
21.4
|
1.0
|
|
CB
|
D:ASP96
|
4.7
|
14.5
|
1.0
|
|
O2X
|
D:RAF201
|
4.8
|
23.9
|
1.0
|
|
CB
|
D:ASN104
|
4.8
|
20.8
|
1.0
|
|
CB
|
D:ASP103
|
4.8
|
22.9
|
1.0
|
|
N
|
D:ASP103
|
4.8
|
19.3
|
1.0
|
|
C5X
|
D:RAF201
|
4.8
|
27.1
|
1.0
|
|
C
|
D:PHE101
|
4.9
|
20.5
|
1.0
|
|
O
|
D:ASP103
|
5.0
|
20.2
|
1.0
|
|
CD2
|
D:TYR38
|
5.0
|
14.5
|
1.0
|
|
CA
|
D:ASP103
|
5.0
|
23.8
|
1.0
|
|
Calcium binding site 5 out
of 8 in 5ofx
Go back to
Calcium Binding Sites List in 5ofx
Calcium binding site 5 out
of 8 in the Plla Lectin, Trisaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Plla Lectin, Trisaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca202
b:11.3
occ:1.00
|
O
|
E:TYR38
|
2.3
|
13.4
|
1.0
|
|
O
|
E:THR100
|
2.3
|
11.7
|
1.0
|
|
OD2
|
E:ASP96
|
2.4
|
9.4
|
1.0
|
|
OD1
|
E:ASP103
|
2.4
|
11.4
|
1.0
|
|
O3X
|
E:RAF201
|
2.4
|
11.9
|
1.0
|
|
OD1
|
E:ASN104
|
2.4
|
13.6
|
1.0
|
|
O4X
|
E:RAF201
|
2.5
|
13.9
|
1.0
|
|
C3X
|
E:RAF201
|
3.4
|
13.6
|
1.0
|
|
C
|
E:TYR38
|
3.4
|
14.2
|
1.0
|
|
C4X
|
E:RAF201
|
3.4
|
15.7
|
1.0
|
|
CG
|
E:ASP103
|
3.4
|
11.8
|
1.0
|
|
CG
|
E:ASP96
|
3.4
|
9.4
|
1.0
|
|
CG
|
E:ASN104
|
3.4
|
13.0
|
1.0
|
|
C
|
E:THR100
|
3.5
|
11.1
|
1.0
|
|
OG1
|
E:THR100
|
3.5
|
10.7
|
1.0
|
|
OD2
|
E:ASP103
|
3.7
|
14.5
|
1.0
|
|
CB
|
E:THR100
|
3.7
|
10.6
|
1.0
|
|
ND2
|
E:ASN104
|
3.8
|
11.2
|
1.0
|
|
OD1
|
E:ASP96
|
3.8
|
9.3
|
1.0
|
|
C2X
|
E:RAF201
|
4.0
|
8.1
|
1.0
|
|
CA
|
E:TYR38
|
4.0
|
12.8
|
1.0
|
|
CA
|
E:THR100
|
4.2
|
11.0
|
1.0
|
|
CB
|
E:TYR38
|
4.3
|
13.1
|
1.0
|
|
N
|
E:GLY39
|
4.4
|
11.7
|
1.0
|
|
N
|
E:PHE101
|
4.5
|
11.9
|
1.0
|
|
CA
|
E:PHE101
|
4.6
|
12.5
|
1.0
|
|
C
|
E:ASP103
|
4.7
|
13.9
|
1.0
|
|
CA
|
E:GLY39
|
4.7
|
12.7
|
1.0
|
|
N
|
E:ASN104
|
4.7
|
14.9
|
1.0
|
|
CB
|
E:ASP96
|
4.7
|
10.0
|
1.0
|
|
CB
|
E:ASP103
|
4.7
|
11.3
|
1.0
|
|
O2X
|
E:RAF201
|
4.8
|
14.6
|
1.0
|
|
CB
|
E:ASN104
|
4.8
|
12.7
|
1.0
|
|
C5X
|
E:RAF201
|
4.8
|
15.9
|
1.0
|
|
N
|
E:ASP103
|
4.8
|
11.2
|
1.0
|
|
O
|
E:ASP103
|
4.9
|
11.8
|
1.0
|
|
CD2
|
E:TYR38
|
4.9
|
10.9
|
1.0
|
|
CA
|
E:ASP103
|
5.0
|
11.3
|
1.0
|
|
C
|
E:PHE101
|
5.0
|
13.8
|
1.0
|
|
Calcium binding site 6 out
of 8 in 5ofx
Go back to
Calcium Binding Sites List in 5ofx
Calcium binding site 6 out
of 8 in the Plla Lectin, Trisaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Plla Lectin, Trisaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca202
b:9.8
occ:1.00
|
O
|
F:TYR38
|
2.3
|
11.4
|
1.0
|
|
O
|
F:THR100
|
2.3
|
11.3
|
1.0
|
|
OD2
|
F:ASP96
|
2.4
|
11.7
|
1.0
|
|
OD1
|
F:ASP103
|
2.4
|
12.4
|
1.0
|
|
O3X
|
F:RAF201
|
2.4
|
12.9
|
1.0
|
|
OD1
|
F:ASN104
|
2.4
|
10.6
|
1.0
|
|
O4X
|
F:RAF201
|
2.6
|
12.9
|
1.0
|
|
C
|
F:TYR38
|
3.4
|
10.3
|
1.0
|
|
C3X
|
F:RAF201
|
3.4
|
13.3
|
1.0
|
|
CG
|
F:ASP103
|
3.4
|
13.3
|
1.0
|
|
CG
|
F:ASN104
|
3.4
|
10.0
|
1.0
|
|
CG
|
F:ASP96
|
3.4
|
10.4
|
1.0
|
|
C4X
|
F:RAF201
|
3.5
|
12.9
|
1.0
|
|
C
|
F:THR100
|
3.5
|
11.3
|
1.0
|
|
OG1
|
F:THR100
|
3.6
|
11.8
|
1.0
|
|
OD2
|
F:ASP103
|
3.7
|
12.5
|
1.0
|
|
ND2
|
F:ASN104
|
3.8
|
12.6
|
1.0
|
|
CB
|
F:THR100
|
3.8
|
11.2
|
1.0
|
|
OD1
|
F:ASP96
|
3.8
|
9.6
|
1.0
|
|
CA
|
F:TYR38
|
4.0
|
11.1
|
1.0
|
|
C2X
|
F:RAF201
|
4.0
|
16.5
|
1.0
|
|
CB
|
F:TYR38
|
4.3
|
9.5
|
1.0
|
|
CA
|
F:THR100
|
4.3
|
13.3
|
1.0
|
|
N
|
F:GLY39
|
4.4
|
10.2
|
1.0
|
|
N
|
F:PHE101
|
4.5
|
9.8
|
1.0
|
|
CA
|
F:PHE101
|
4.6
|
9.6
|
1.0
|
|
C
|
F:ASP103
|
4.7
|
13.0
|
1.0
|
|
N
|
F:ASN104
|
4.7
|
12.9
|
1.0
|
|
CA
|
F:GLY39
|
4.7
|
12.5
|
1.0
|
|
CB
|
F:ASP96
|
4.7
|
11.0
|
1.0
|
|
CB
|
F:ASP103
|
4.7
|
13.3
|
1.0
|
|
O2X
|
F:RAF201
|
4.8
|
12.9
|
1.0
|
|
CB
|
F:ASN104
|
4.8
|
11.6
|
1.0
|
|
N
|
F:ASP103
|
4.8
|
13.5
|
1.0
|
|
C5X
|
F:RAF201
|
4.8
|
12.9
|
1.0
|
|
O
|
F:ASP103
|
4.9
|
12.4
|
1.0
|
|
C
|
F:PHE101
|
5.0
|
11.1
|
1.0
|
|
CA
|
F:ASP103
|
5.0
|
12.4
|
1.0
|
|
Calcium binding site 7 out
of 8 in 5ofx
Go back to
Calcium Binding Sites List in 5ofx
Calcium binding site 7 out
of 8 in the Plla Lectin, Trisaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Plla Lectin, Trisaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca201
b:19.4
occ:1.00
|
O
|
G:THR100
|
2.3
|
26.8
|
1.0
|
|
O
|
G:TYR38
|
2.3
|
20.9
|
1.0
|
|
OD2
|
G:ASP96
|
2.4
|
15.2
|
1.0
|
|
OD1
|
G:ASN104
|
2.4
|
20.7
|
1.0
|
|
OD1
|
G:ASP103
|
2.4
|
23.6
|
1.0
|
|
C
|
G:TYR38
|
3.4
|
20.2
|
1.0
|
|
CG
|
G:ASP96
|
3.4
|
18.3
|
1.0
|
|
CG
|
G:ASP103
|
3.4
|
27.1
|
1.0
|
|
CG
|
G:ASN104
|
3.5
|
21.8
|
1.0
|
|
C
|
G:THR100
|
3.5
|
23.6
|
1.0
|
|
OD1
|
G:ASP96
|
3.7
|
15.2
|
1.0
|
|
OD2
|
G:ASP103
|
3.8
|
24.8
|
1.0
|
|
OG1
|
G:THR100
|
3.8
|
27.0
|
1.0
|
|
ND2
|
G:ASN104
|
3.8
|
27.4
|
1.0
|
|
CB
|
G:THR100
|
4.0
|
25.0
|
1.0
|
|
CA
|
G:TYR38
|
4.0
|
21.8
|
1.0
|
|
CB
|
G:TYR38
|
4.3
|
17.9
|
1.0
|
|
CA
|
G:THR100
|
4.3
|
24.2
|
1.0
|
|
N
|
G:PHE101
|
4.4
|
20.7
|
1.0
|
|
CA
|
G:PHE101
|
4.5
|
20.8
|
1.0
|
|
N
|
G:GLY39
|
4.5
|
22.9
|
1.0
|
|
O
|
G:HOH392
|
4.6
|
41.6
|
1.0
|
|
N
|
G:ASN104
|
4.7
|
22.0
|
1.0
|
|
C
|
G:ASP103
|
4.7
|
24.6
|
1.0
|
|
CB
|
G:ASP96
|
4.7
|
17.1
|
1.0
|
|
CB
|
G:ASP103
|
4.7
|
21.1
|
1.0
|
|
N
|
G:ASP103
|
4.8
|
22.5
|
1.0
|
|
CB
|
G:ASN104
|
4.8
|
19.3
|
1.0
|
|
CA
|
G:GLY39
|
4.8
|
33.4
|
1.0
|
|
C
|
G:PHE101
|
4.8
|
26.5
|
1.0
|
|
CA
|
G:ASP103
|
5.0
|
20.6
|
1.0
|
|
Calcium binding site 8 out
of 8 in 5ofx
Go back to
Calcium Binding Sites List in 5ofx
Calcium binding site 8 out
of 8 in the Plla Lectin, Trisaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Plla Lectin, Trisaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca202
b:15.6
occ:1.00
|
O
|
H:THR100
|
2.4
|
16.7
|
1.0
|
|
OD2
|
H:ASP96
|
2.4
|
12.7
|
1.0
|
|
OD1
|
H:ASN104
|
2.4
|
16.1
|
1.0
|
|
O
|
H:TYR38
|
2.4
|
14.6
|
1.0
|
|
O3X
|
H:RAF201
|
2.5
|
43.8
|
1.0
|
|
OD1
|
H:ASP103
|
2.5
|
17.1
|
1.0
|
|
O4X
|
H:RAF201
|
2.5
|
20.0
|
1.0
|
|
CG
|
H:ASN104
|
3.4
|
15.3
|
1.0
|
|
C3X
|
H:RAF201
|
3.4
|
39.1
|
1.0
|
|
C4X
|
H:RAF201
|
3.4
|
32.6
|
1.0
|
|
CG
|
H:ASP96
|
3.4
|
16.3
|
1.0
|
|
C
|
H:TYR38
|
3.4
|
12.5
|
1.0
|
|
CG
|
H:ASP103
|
3.5
|
15.3
|
1.0
|
|
C
|
H:THR100
|
3.5
|
18.2
|
1.0
|
|
OG1
|
H:THR100
|
3.7
|
17.1
|
1.0
|
|
ND2
|
H:ASN104
|
3.7
|
16.0
|
1.0
|
|
OD1
|
H:ASP96
|
3.8
|
13.8
|
1.0
|
|
OD2
|
H:ASP103
|
3.9
|
14.4
|
1.0
|
|
CB
|
H:THR100
|
4.0
|
17.8
|
1.0
|
|
C2X
|
H:RAF201
|
4.0
|
44.2
|
1.0
|
|
CA
|
H:TYR38
|
4.0
|
10.8
|
1.0
|
|
CB
|
H:TYR38
|
4.3
|
12.7
|
1.0
|
|
CA
|
H:THR100
|
4.4
|
21.1
|
1.0
|
|
O
|
H:HOH375
|
4.4
|
34.0
|
1.0
|
|
N
|
H:PHE101
|
4.5
|
18.8
|
1.0
|
|
N
|
H:GLY39
|
4.5
|
11.6
|
1.0
|
|
CA
|
H:PHE101
|
4.5
|
15.5
|
1.0
|
|
N
|
H:ASN104
|
4.7
|
13.3
|
1.0
|
|
C
|
H:ASP103
|
4.7
|
16.7
|
1.0
|
|
CB
|
H:ASP96
|
4.7
|
14.9
|
1.0
|
|
CB
|
H:ASN104
|
4.7
|
13.9
|
1.0
|
|
O2X
|
H:RAF201
|
4.7
|
49.2
|
1.0
|
|
CA
|
H:GLY39
|
4.7
|
13.1
|
1.0
|
|
C5X
|
H:RAF201
|
4.8
|
31.0
|
1.0
|
|
CB
|
H:ASP103
|
4.8
|
15.2
|
1.0
|
|
N
|
H:ASP103
|
4.9
|
14.3
|
1.0
|
|
C
|
H:PHE101
|
4.9
|
17.6
|
1.0
|
|
O
|
H:ASP103
|
5.0
|
15.8
|
1.0
|
|
Reference:
G.Beshr,
A.Sikandar,
E.M.Jemiller,
N.Klymiuk,
D.Hauck,
S.Wagner,
E.Wolf,
J.Koehnke,
A.Titz.
Photorhabdus Luminescens Lectin A (Plla): A New Probe For Detecting Alpha-Galactoside-Terminating Glycoconjugates. J. Biol. Chem. V. 292 19935 2017.
ISSN: ESSN 1083-351X
PubMed: 28972138
DOI: 10.1074/JBC.M117.812792
Page generated: Wed Jul 9 09:16:49 2025
|
