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Calcium in PDB 5par: Crystal Structure of Factor Viia in Complex with 1H-Benzimidazol-2- Amine

Enzymatic activity of Crystal Structure of Factor Viia in Complex with 1H-Benzimidazol-2- Amine

All present enzymatic activity of Crystal Structure of Factor Viia in Complex with 1H-Benzimidazol-2- Amine:
3.4.21.21;

Protein crystallography data

The structure of Crystal Structure of Factor Viia in Complex with 1H-Benzimidazol-2- Amine, PDB code: 5par was solved by M.Stihle, A.Mayweg, S.Roever, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.72 / 2.10
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.479, 95.479, 116.331, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22

Other elements in 5par:

The structure of Crystal Structure of Factor Viia in Complex with 1H-Benzimidazol-2- Amine also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Factor Viia in Complex with 1H-Benzimidazol-2- Amine (pdb code 5par). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Factor Viia in Complex with 1H-Benzimidazol-2- Amine, PDB code: 5par:

Calcium binding site 1 out of 1 in 5par

Go back to Calcium Binding Sites List in 5par
Calcium binding site 1 out of 1 in the Crystal Structure of Factor Viia in Complex with 1H-Benzimidazol-2- Amine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Factor Viia in Complex with 1H-Benzimidazol-2- Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca501

b:51.7
occ:1.00
 O C:GLU275 2.3 49.0 1.0
OE1 C:GLU270 2.5 36.9 1.0
O C:ASP272 2.5 40.2 1.0
OE2 C:GLU280 2.5 39.1 1.0
O C:HOH714 2.5 45.9 1.0
O C:HOH631 2.8 47.0 1.0
CD C:GLU270 3.4 39.4 1.0
C C:GLU275 3.5 48.1 1.0
C C:ASP272 3.5 40.7 1.0
CD C:GLU280 3.6 38.1 1.0
OE2 C:GLU270 3.6 41.2 1.0
O C:HOH633 3.9 37.8 1.0
CG C:GLU280 3.9 38.2 1.0
N C:ASP272 4.0 41.1 1.0
CA C:ASP272 4.2 41.3 1.0
CA C:HIS276 4.3 47.5 1.0
N C:HIS276 4.3 47.6 1.0
N C:HIS271 4.5 39.3 1.0
N C:LEU273 4.5 40.4 1.0
N C:GLU275 4.5 46.6 1.0
CG C:GLU275 4.5 51.6 1.0
CA C:GLU275 4.5 48.6 1.0
O C:HOH604 4.5 53.4 1.0
N C:ASP277 4.6 45.3 1.0
CB C:ASP272 4.6 41.6 1.0
CA C:LEU273 4.7 41.1 1.0
OE1 C:GLU280 4.7 38.3 1.0
CG C:GLU270 4.7 39.7 1.0
O C:HOH635 4.8 48.5 1.0
O C:HOH721 4.8 49.1 1.0
OD1 C:ASP277 4.8 43.9 1.0
C C:HIS276 4.9 46.4 1.0
C C:HIS271 4.9 40.4 1.0
CG C:ASP277 5.0 45.0 1.0

Reference:

A.Mayweg, S.Roever, M.G.Rudolph. Crystal Structure of A Factor Viia Complex To Be Published.
Page generated: Wed Jul 9 09:27:49 2025

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