Calcium in PDB 5t57: Crystal Structure of A Semialdehyde Dehydrogenase Nad-Binding Protein From Cupriavidus Necator in Complex with Calcium and Nad

The structure of Crystal Structure of A Semialdehyde Dehydrogenase Nad-Binding Protein From Cupriavidus Necator in Complex with Calcium and Nad, PDB code: 5t57 was solved by W.J.Cook, A.A.Fedorov, E.V.Fedorov, H.Huang, J.B.Bonanno, J.A.Gerlt, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.96 / 1.65
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	87.903, 71.140, 47.649, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 20.3

The structure of Crystal Structure of A Semialdehyde Dehydrogenase Nad-Binding Protein From Cupriavidus Necator in Complex with Calcium and Nad also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Calcium atom in the Crystal Structure of A Semialdehyde Dehydrogenase Nad-Binding Protein From Cupriavidus Necator in Complex with Calcium and Nad (pdb code 5t57). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Semialdehyde Dehydrogenase Nad-Binding Protein From Cupriavidus Necator in Complex with Calcium and Nad, PDB code: 5t57:

Calcium binding site 1 out of 1 in the Crystal Structure of A Semialdehyde Dehydrogenase Nad-Binding Protein From Cupriavidus Necator in Complex with Calcium and Nad


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Semialdehyde Dehydrogenase Nad-Binding Protein From Cupriavidus Necator in Complex with Calcium and Nad within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:23.9 occ:1.00 OE2 A:GLU184 2.3 14.8 1.0 O A:HOH464 2.3 26.7 1.0 O A:HOH405 2.4 27.2 1.0 O A:HOH412 2.4 20.6 1.0 OD2 A:ASP93 2.4 21.1 1.0 O A:HOH501 2.5 26.9 1.0 O A:HOH426 3.2 38.1 1.0 CD A:GLU184 3.3 16.5 1.0 CG A:ASP93 3.3 21.6 1.0 OD1 A:ASP93 3.7 23.3 1.0 CG A:GLU184 3.7 14.8 1.0 OE1 A:GLU189 3.8 23.7 1.0 CE1 A:HIS114 4.3 18.9 1.0 OE2 A:GLU189 4.3 21.5 1.0 CD A:GLU189 4.4 21.2 1.0 O2D A:NAD301 4.4 18.9 1.0 OE1 A:GLU184 4.4 14.8 1.0 CB A:ASP93 4.5 19.2 1.0 O A:HOH479 4.6 20.4 1.0 NE2 A:HIS114 4.9 18.4 1.0 ZN A:ZN303 5.0 22.0 1.0 CB A:GLU184 5.0 15.6 1.0

W.J.Cook, A.A.Fedorov, E.V.Fedorov, H.Huang, J.B.Bonanno, J.A.Gerlt, S.C.Almo. Crystal Structure of A Semialdehyde Dehydrogenase Nad-Binding Protein From Cupriavidus Necator in Complex with Calcium and Nad To Be Published.